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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tccaaaactttgagtccttgttgattcacagccttatttgcactcatctctggaattttagtccttggctctgagcagtttctacttcttggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAAATATGACGCAGTCACCAA

Basic information

species Vitis vinifera
transcript Vv16s0022g01770.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: LOC_Os03g14450.2 (Oryza sativa), 3'ss of exon 13
---tccaaaactttgagtccttgttgattcacagccttatttgcactcatctctggaattttagtccttggctctgagcagt-ttctacttcttggtatt---gcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAAATATGACGCAGTCACCAA
   |    ||  |||  |  | ||||  | ||  |  | ||       || | ||   |||| || | |    || |    | ||   | ||||   |||   |||||||||||||||||| || ||||||||  |||| || || ||||| ||||| |||||||| ||||||||||| || ||||| |     |   |  |||   
gtttgtgtaaacttgcctggt-gttggctaacgacactttta------atttttgaggttttggtgcatctaactaactcatatttcccctctttaaattggagcagCTTCTTAGGATCGAGGAGGAGCTTGGTGCTGCTGCCGTCTATGCCGGAGCCAAATTCCGTGCACCAGTGGAGCCCTACTAGATGGGAATAGAACCACTTC

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G048371_T01 (Zea mays), 3'ss of exon 17
-------------------------------------------------------------------tccaaaactttgagtcc-----ttgt-tgattcacagccttatttgcactcatctctggaat----tttagtccttggctctgagcagtttctacttcttggtatt-gcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAA---ATATGACGCAGTCACCAA
                                                                   |   | ||||   | ||     |||| | |||||  | ||  ||||   |    |   |||     ||| ||| || |  || | | || |    ||  || |    ||||||||||||||| ||||||||||||||  ||   ||||| || ||||| || |||||||| ||||| ||||| || |||||||       || |||    |   
gcaagtgattcctcgagaactatactactaaaatctcagctttctgatagtaatttgttttgtgacttgtgacacttgatgcccatcttttgtgtcattcat-gtctgttttgggtttggtttgagaacaatatttggtcatttgtactaatctgtgttacttttatgatgggagcagCTTCTTAGGATTGAAGAAGAGCTTGGCGCTATTGCTGTCTACGCAGGTGCCAAATTCCGTGCACCTGTGGAGCCCTACTAAACGGGCGGGATGCAAGTGC---

upper sequence: Vv16s0022g01770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G048371_T02 (Zea mays), 3'ss of exon 4
tccaaaactttgagtccttgttgattcacagccttatttgcactcatctctggaattttagtccttggctctgagcagtttctacttcttggtatt-gcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAAATATGACGCAGTCACCAA
                                                        ||| ||| || |  || | | || |    ||  || |    ||||||||||||||| ||||||||||||||  ||   ||||| || ||||| || |||||||| ||||| ||||| || ||||||                   
------------------------------------------------------tatttggtcatttgtactaatctgtgttacttttatgatgggagcagcttcttaggattgaagaagagcttggcgctattgctgtctacgcaggtgccaaATTCCGTGCACCTGTGGAGCCCTACTAA-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134221|gb|CB919559.1|CB919559
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGAAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|29783193|gb|CB349213.2|CB349213
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110399162|gb|EC965655.1|EC965655
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71882930|gb|DT031985.1|DT031985
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71890438|gb|DT039493.1|DT039493
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|22009325|gb|BQ794359.1|BQ794359
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|27586582|gb|CB009277.1|CB009277
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|28968210|gb|CB347243.1|CB347243
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30297237|gb|CB974031.1|CB974031
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|33408992|gb|CF214619.1|CF214619
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|37184490|gb|CF603844.1|CF603844
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|156732544|gb|EV236665.1|EV236665
EST:     TCAAGACTGGAGCTCCTTGCAGGCCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110408001|gb|EC973621.1|EC973621
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71866052|gb|DT015107.1|DT015107
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|26267083|gb|CA818146.1|CA818146
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGGTCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|22008750|gb|BQ793784.1|BQ793784
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|22010889|gb|BQ795923.1|BQ795923
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30297383|gb|CB974177.1|CB974177
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30126213|gb|CB911552.1|CB911552
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30297814|gb|CB974608.1|CB974608
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|26266435|gb|CA817498.1|CA817498
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110422151|gb|EC988464.1|EC988464
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110695109|gb|EE072750.1|EE072750
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110732424|gb|EE107698.1|EE107698
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|27585372|gb|CB008067.1|CB008067
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|34543958|gb|CF512190.1|CF512190
EST:     CCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110405512|gb|EC971053.1|EC971053
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110700865|gb|EE077893.1|EE077893
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|34548911|gb|CF517143.1|CF517143
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTTTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30131875|gb|CB917214.1|CB917214
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|22008400|gb|BQ793434.1|BQ793434
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30301117|gb|CB977911.1|CB977911
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110715456|gb|EE093529.1|EE093529
EST:     TCAAGACTGGAGCTCCTTGCANGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTANGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGA
EST: gi|30306141|gb|CB982935.1|CB982935
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30297175|gb|CB973969.1|CB973969
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110427221|gb|EC993655.1|EC993655
EST:     AAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: AAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|22008176|gb|BQ793210.1|BQ793210
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|32246234|gb|CD712053.1|CD712053
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110408447|gb|EC974083.1|EC974083
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|46918466|gb|CN547795.1|CN547795
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30251837|gb|CB969570.1|CB969570
EST:     TCAAGACTGGAGCTTCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71888791|gb|DT037846.1|DT037846
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30125536|gb|CB910875.1|CB910875
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71871681|gb|DT020736.1|DT020736
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30300973|gb|CB977767.1|CB977767
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71866289|gb|DT015344.1|DT015344
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30136680|gb|CB922018.1|CB922018
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110715384|gb|EE093369.1|EE093369
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|34544046|gb|CF512278.1|CF512278
EST:     CCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110716059|gb|EE090707.1|EE090707
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|46918435|gb|CN547764.1|CN547764
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|29783151|gb|CB349136.2|CB349136
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|32456833|gb|CD798007.1|CD798007
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110429400|gb|EC995891.1|EC995891
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30305158|gb|CB981952.1|CB981952
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|77586013|gb|DV222103.1|DV222103
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110410205|gb|EC975883.1|EC975883
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110412013|gb|EC977745.1|EC977745
EST:     CAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: CAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110418381|gb|EC984529.1|EC984529
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|26265143|gb|CA816206.1|CA816206
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGGTCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|32457822|gb|CD798996.1|CD798996
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30134791|gb|CB920129.1|CB920129
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30129457|gb|CB914796.1|CB914796
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|34363639|gb|CF405224.1|CF405224
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|37184412|gb|CF603766.1|CF603766
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110407119|gb|EC972714.1|EC972714
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|71886270|gb|DT035325.1|DT035325
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110358476|gb|EC922715.1|EC922715
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|83275978|gb|DV939986.1|DV939986
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110413119|gb|EC978892.1|EC978892
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110377559|gb|EC942632.1|EC942632
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110425867|gb|EC992262.1|EC992262
EST:     TCAAGACTGGAGCTCCTTGCAGGTTTGAACGCCTTGCCAAATATAACCAG                         CTTTTTAGGATCGAAGAAGAGCTTGGATTTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|110362047|gb|EC925554.1|EC925554
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30305842|gb|CB982636.1|CB982636
EST:     TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30128265|gb|CB913604.1|CB913604
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA
EST: gi|30125009|gb|CB910348.1|CB910348
EST:     TCAAGACTGGAGCTCCTTGCAGGTCAGAACGCCTTGCCAAATATAACCAG                         CTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGAAGCA
genomic: TCAAGACTGGAGCTCCTTGCAGGTCTGAACGCCTTGCCAAATATAACCAGgtaaagctct ... ggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctggaattttagtccttggctctgagcagtttctacttcttggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAAATATGACGCAGTCACCAA
                                       cttcttg  CT-rich tract
        aattttagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tccaaaactttgagtccttgttgattcacagccttatttgcactcatctctggaattttagtccttggctctgagcagtttctacttcttggtattgcagCTTCTTAGGATCGAAGAAGAGCTTGGATCTGCAGCTGTGTATGCAGGAGCAAAATTCCGAGCACCAGTGGAACCTTACTAAAATATGACGCAGTCACCAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
-ccaaaac
- - - - - - - - cttgttg
- - - - - - - - - - - - - cacagcc
- - - - - - - - - - - - - - - - - - - - cactcat
- - - - - - - - - - - - - - - - - - - - - - - -ctctgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttgg