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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttctcttggcctgatgcctacgtgaatttgttggtaaaatagattgcacaaatttcttttaggcttttaacccctcttctttttttttttctcaaagctgtgctttaccccctcattttactgcaagattttcacattgctgctttatggaacagTGCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATA

Basic information

species Vitis vinifera
transcript Vv15s0021g02450.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv15s0021g02450.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA01G14800.1 (Glycine max), 3'ss of exon 11
gtttttctcttggcctgatgcctacgtgaatttgttggtaaaatagattgcacaaatttcttttaggcttttaacccctcttctttttttttttctcaaagctgtgctttaccccctcattttactgcaagattttcacattgctgctttatggaacagTGCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATA
||  || || |   ||| |  | |  |   ||  ||    ||| | || ||||| ||  |  | |  ||   |  |    |   ||  ||  |||        ||| || ||    | ||  | ||   | | |||     || |||||| || ||||||| ||| ||||  ||| ||| || ||||| |||||||| |||||||| ||  ||||||  |||||||||||||||||  ||||| ||||||||||||| |
gtccttttcatt-tctgttatccatat---ttcattttataaagacatcgcacatatacccatca--ctcccagtcttcatctattgattccttca-------gtgattgac----taataattctttgataatttg----tggtgcttt-tgtaacagTGTTATGCAGCTTCCAGACCGGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACATCAACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctttaccccctcattttactgcaagattttcacattgctgctttatggaacagTGCTATACAGCAGCCAAACCTGTGATATTGGAACCTGTAATGCTTGTGGAATTGAAAGCGCCAACAGAATTTCAGGGCACTGTTACTGGTGACATCAATA
                                       ctgcttt  CT-rich tract
            tcatttta  TA-rich tract