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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgtaaacgtttgtttgacattaactcaatttcataaaaaatgctaatattgtgtcaatgtattttctttgtagTTGAAGATGTGCTCAGATCAGGTTCAAAAACTTGCAGAAGATAGATTGCAAAGCTTAGGTACTTTGGCTAATTTCCAAAAAAGGTTACTGGATGTGACTA

Basic information

species Vitis vinifera
transcript Vv15s0021g02140.t01
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349827931|gb|FQ422799.1|FQ422799
EST:     CTACATCTCTTGGNNNNNNNGACATGAAAGCTGGAAGAATTGAAGATCAG                         ---A---TGTGCTCAGATCAGGTTCAAAAACTTGCAGAAGATAGATTGCAA
genomic: CTACATCTCTTGGTTTTTTTGACATGAAAGCTGGAAGAATTGAAGATCAGgtatttgtaa ... ttctttgtagTTGAAGATGTGCTCAGATCAGGTTCAAAAACTTGCAGAAGATAGATTGCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attaactcaatttcataaaaaatgctaatattgtgtcaatgtattttctttgtagTTGAAGATGTGCTCAGATCAGGTTCAAAAACTTGCAGAAGATAGATTGCAAAGCTTAGGTACTTTGGCTAATTTCCAAAAAAGGTTACTGGATGTGACTA
                      tgctaat  putative branch site (score: 2)
                                         tattttcttt  putative PPT
        aatttcataaaaaatg  TA-rich tract