Sequence
atgc intronic sequence ATGC exonic sequence...gaagattaaatggattggcctgttaactttttaatttgttttcacaaatatcttgggaaacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 8
gaagattaaatggattggcctgt-taactttttaatttgttttcacaaatatcttgggaaacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
| || || || | | | | | | ||||| ||| | | || | | | | || | |||| || | ||| ||||| |||||||||| |||| |||||||| |||||||| ||| | || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || |||||||
tattgttttttgattttgtttttcttgatgataaatttagtttatgacgtgctttagaagaatgtatttcttataatttcatgttattggcatttg-acagAGATATGGTGAGATAAGCAAACAAAGACTAGATAGGGCAATTCTTACTTTCTTTCAGCATTTCCGAAAGTCTTATGTAGGAGATCAGGCTATTCATTCTT
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 14
gaagattaaatggattggcctgt-taactttttaatttgttttcacaaatatcttgggaaacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
| || || || | | | | | | ||||| ||| | | || | | | | || | ||| || | ||| ||||| |||||||||| |||| |||||||| |||||||| ||| | || ||||| || |||||||||||||| ||||||||||||||||| |||||||| || |||||||
tattgttttttgctttagtttttcttgatgataaatttagtttatgacgtgctttagaagaatgtatttcttatattttcatgttattggcatttg-acagAGATATGGTGAGATAAGCAAACAAAGACTAGATAGGGCAATTCTTACTTTCTTTCAGCATTTCCGAAAGTCTTATGTAGGAGATCAGGCTATTCATTCTT
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 3'ss of exon 16
gaagattaaatggattg-gcctgttaactttttaatttgttttcacaaatatcttggga-aacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
| || | || |||||| |||| || | || | | || | ||| | | | | | ||| | ||||||||| |||||||||| || ||||| || |||||||||||||| || ||||| || |||| || |||||||| || || ||||||||||||||||| |
attttctgcttgaagtgcacctgttggattttgttttctctcaggtaagttcactacattaatctcatctctaattaatcaaaaacacttc--tttctgcagAGATATGGTGAAATAAGTAAACAAAGGCTTGATCGTGCCATTCTTACCTTCTTCCAAAATTTCCGGAAGTCTTACGTTGGTGATCAGGCCATGCATTCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatatcttgggaaacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
tattgat putative branch site (score: 3)
tcattttt putative PPT
attgaaactattgatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gaagattaaatggattggcctgttaactttttaatttgttttcacaaatatcttgggaaacattgaaactattgattttattctgttgtcatttttacagAGATATCGTGAAATAAGCAAGCAAAGACTCGATCGTGCCATTCTCACATTCTTTCAGCATTTTCGAAAGTCTTATGTAGGGGATCAGGCCATGCATTCTT
- - - -aaatgga
- - - - - - - - - cctgtta
- - - - - - - - - - - - - - - - - - - - - cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacta