Sequence
atgc intronic sequence ATGC exonic sequence...ggtgtatgacatacatcaacaataaattcttgcatacttccaattaccttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA20G32370.1 (Glycine max), 3'ss of exon 18
----ggtgtatgacatacatcaacaataa-attcttgcatacttccaattaccttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
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ctcaagcatttaggtaacttgatcattgacatatctatatattgttgtttactct-tgcatggtgcactatctt----ctaacatttttgtcaattatattacagGCTGTTCTTGAGAAGCAGAGTTATATGCTTATTGGGAGGCATGATATTGAGAAATTGATGAGGATTGACCCCTCAAGTGCATATTTACCGAATCTGCTTG
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA10G35190.2 (Glycine max), 3'ss of exon 15
ggtgtatgacatacatcaacaataa-attcttgcatacttccaattaccttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
| | | | | | || | || | ||| |||| | || | || | || | ||| | || | || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||| || | ||||||| |||||| |||| |||
-gcatttaggtaagctgatcattggcatatctatatatagttgtttactcttgcatggtggccttcgctatcttctaacatgtttgtcaattatattgcagGCTGTTCTTGAGAAGCAGAGTTATATGCTTATTGGGAGGCATGATATTGAGAAGTTGATGAGGATTGACCCCTCAAGTGCATATTTACCGAATCTGCTTG
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT3G10380.1 (Arabidopsis thaliana), 3'ss of exon 18
ggtgtatgacatacatcaacaataaattcttgcatacttccaattaccttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
|| |||| || | | || | || | | ||| | | |||| ||| ||| || || | |||||||| ||||| ||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| | || ||||| ||||||||| | | |||
tacccatttaatacctctttagtttccctaaatgtaaagcgttgtatttcttccttcgtacacacttttctgaccttaggtttcattgttagtatttcagGCTGTTCTAGAGAAGCTCAGTTACATGCTCATTGGGAGGCATGATATTGAGAAATTGATGCGGCTTGATGCGGCGAGTGCTTGTTTACCATCTACGCTTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
ttcgtttttttggttt CT-rich tract
attcgtttttttggtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtgtatgacatacatcaacaataaattcttgcatacttccaattaccttataattcattcgtttttttggtttcttttttttttttttttttttttcagGCAGTTCTTGAGAAGCAGAGTTATATGCTAATTGGGAGGCATGATATTGAGAAATTGATGCGATGTGATCCAGCTAGTGCATGTTTACCAAATCCATTTG
-gtgtatg
- - - - acataca
- - - - - - - - - - aataaat
- - - - - - - - - - - - - - cttgcat
- - - - - - - - - - - - - - - - - - cttccaa