1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ttttctgacccatcttgtagctttttcaaaattgttttcttttcttatttttaggttttaaaagttcaaactcatttttccactttgcttgtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG
species | Vitis vinifera |
transcript | Vv13s0019g04370.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATEST: gi|110364954|gb|EC928584.1|EC928584
genomic: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
EST: CTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATEST: gi|30298937|gb|CB975731.1|CB975731
genomic: CTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
EST: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGA GTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
genomic: TGACTGATTCAGATCCTAAGCTACAGAAAGCCCCAGTTAACTATGAAGGAgtaagtttct ... gtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCAT
tatttttaggttttaaaagttcaaactcatttttccactttgcttgtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG
ttttaaaagttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttctgacccatcttgtagctttttcaaaattgttttcttttcttatttttaggttttaaaagttcaaactcatttttccactttgcttgtgtgaacagGTTCGAGCTTCTGGCTTTGGGGGATGGTTCCTTCTAAGACTCTCCCTTCATGACCCTGTTCTTCCCCTTAACATTGAG
- - - -acccatc
- - - - - - - -tgtagct
- - - - - - - - - - - - -tcaaaat