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...acacttaaaacctttataatgggtgagaagattgaaatctctaatgccatttcttgtgtagttcttttacaatttttcctttaaagcttttgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGGCTATGCTGGCTCTCATTGATGCTGGGCAG
species | Vitis vinifera |
transcript | Vv11s0065g00640.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|18458985|gb|BM437263.1|BM437263
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|32248816|gb|CD714635.1|CD714635
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|161717232|gb|FC067238.1|FC067238
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|30299701|gb|CB976495.1|CB976495
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|110391126|gb|EC956083.1|EC956083
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|32270024|gb|CD719183.1|CD719183
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|32249043|gb|CD714862.1|CD714862
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTANATACCGCATGGEST: gi|34543141|gb|CF511373.1|CF511373
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|32269610|gb|CD718769.1|CD718769
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGNGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|30320591|gb|CD003853.1|CD003853
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|30327518|gb|CD010780.1|CD010780
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGNGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCA-CAGATCTCATGTAEST: gi|352785395|gb|FQ477609.1|FQ477609
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTA
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGEST: gi|30328066|gb|CD011328.1|CD011328
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
EST: AGCTTGCTTCTGGTGGTTGGGGCCAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCEST: gi|34543224|gb|CF511456.1|CF511456
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATC
EST: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAG GTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
genomic: AGCTTGCTTCTGGTGGTTGGGGCGAGAGTTACCTTTCGTGTCAGAACAAGgttaagtctg ... tgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGG
gccatttcttgtgtagttcttttacaatttttcctttaaagcttttgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGGCTATGCTGGCTCTCATTGATGCTGGGCAG
cttttgtttt CT-rich tract
ttttacaatttttcct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacttaaaacctttataatgggtgagaagattgaaatctctaatgccatttcttgtgtagttcttttacaatttttcctttaaagcttttgttttacagGTGTATTCAAATCTTGATGGCAACAGATCTCATGTAGTAAATACCGCATGGGCTATGCTGGCTCTCATTGATGCTGGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - -taaaacc
- - - - - - - - - - gggtgag
- - - - - - - - - - - - - - -gattgaaa
- - - - - - - - - - - - - - - - - - - - -taatgcc