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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgttagattggtaaaattccatgctaacttttctgatgaaccctttttgtaaattgattattccttgcattaaatgtctgcagGCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTGTTAGCTGTCTCAACTAATGAGAATGGTATTAAAATACTAGCAAATCAGGAGGGAATTAGGC

Basic information

species Vitis vinifera
transcript Vv11s0016g05620.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA17G12110.1 (Glycine max), 3'ss of exon 16
gta-ttgttagattggtaaaattccatgctaacttttctgatgaaccctttttgtaaattgattattccttgcattaaatgtctgcagGCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTGTTAGCTGTCTCAACTAATGAGAATGGTATTAAAATACTAGCAAATCAGGAGGGAATTAGGC
|||  |  | || ||  |   |    |  | | | |  |||| |   | || ||||       || | | ||  ||  |  ||||||||| || || |||||| ||||||||||||| || |||||||| |||||||| || ||||| |||||  ||||||| ||||| ||    || ||||||||||
gtaactactggactgacattgtgttttattta-tctgatgataatttcattatgtag------taatacatgtctttgaaatctgcagGCTTCACCCTGTATTAGATTTAACAAGGATGGAATACTGTTGGCTGTCTCCACAAATGACAATGGAGTTAAAATTCTAGCTAACGCAGAAGGAATTAGGC

upper sequence: Vv11s0016g05620.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA13G22720.1 (Glycine max), 3'ss of exon 16
gtattgttagattggtaaaattccatgctaacttttctgatgaaccctttttgtaaattgattattccttgcattaaatgtctgcagGCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTGTTAGCTGTCTCAACTAATGAGAATGGTATTAAAATACTAGCAAATCAGGAGGGAATTAGGC
   |  |||    | | | |||   |  ||  || ||||||||    ||  |    ||  | || | | ||  |  ||  ||||||||| ||||| |||||| ||||||||||||| || |||||||| |||||||| || ||||| | |||  ||||||| ||||| |||   || ||||||||||
--gtaattactgggttgacattgtgtttta-tttatctgatgataatttcattatgatgtagtaatacatgtctataaaatctgcagGCTTCTCCCTGTATTAGATTTAACAAGGATGGAATACTGTTGGCTGTCTCCACAAATGACAGTGGAGTTAAAATTCTAGCTAATGCAGAAGGAATTAGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161719097|gb|FC065705.1|FC065705
EST:     TGGACAATGTTAACCTTTTGATGACAACTGATGCAGAGGGTGGATTGCCG                         GCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTATTAGCTGTCTCA
genomic: TGGACAATGTTAACCTTTTGATGACAACTGATGCAGAGGGTGGATTGCCGgtattgttag ... atgtctgcagGCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTGTTAGCTGTCTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctgatgaaccctttttgtaaattgattattccttgcattaaatgtctgcagGCGTCTCCTTGTATTCGATTTAACAAGGAAGGGATACTGTTAGCTGTCTCAACTAATGAGAATGGTATTAAAATACTAGCAAATCAGGAGGGAATTAGGC
               tttttgtaaattgatt  TA-rich tract