Sequence
atgc intronic sequence ATGC exonic sequence...aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggttggctgccttacattttgattgttccactttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA09G42180.1 (Glycine max), 3'ss of exon 15
---aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggttggctg-ccttacattttgattgttccac---tttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
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gtttttatggaggataagcagggggttactcatttcttatt-------aattttaatttgctgatctgacctgactgtttgatagttctacttgttcctccactcagGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACTTGGATTCCATCCAACTTCTATCCTCTTGCACGTGTCCTCTTCCTCAAA
upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA20G00320.1 (Glycine max), 3'ss of exon 17
aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggttggctg-ccttacattttgattgttccac---tttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
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---ggttttaaggaggataagtaggggtttactcatttcttattaatttta-atttgctcatctgacctgactgtttgatagttctacttgttcctccactcagGTAACCTATGATACAACTGGATTTCTGGAGAAAAACAGAGACCTATTGCACGTGGATTCCATCCAACTTCTATCCTCATGCACGTGTCCTCTTCCTCAAA
upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 3'ss of exon 17
-----------------------------------------aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggtt-----ggctgccttacattttgattgttccactttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
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gtaatagctctaaaaactcagtggcaccattttacatgatatatcagaacacaagacatgatatagagtagagtttctgggatcaattttgaggtttagaaatcaagaatgaatcagtaacctagtgtgatttttttctaactcagGTTACATATGAGACGACTGGATTTCTAGAGAAGAACCGAGATTTGTTGCATTCAGATTCTATTCAACTTTTGTCGTCTTGCTCTTGCCACCTCCCTCAGG
upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 3'ss of exon 19
----------aaaaggggaaaataacgtgtttttatttttatttttttgtaaaa----aaatttgtatctggttggctgcctt---acattttgattgttc-cactttctcc----attcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
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gtaacagctcttgaactctctgtgacacaaacacagttttgcgttattcaaaaacaggaacctagtctcggtctgaatgcttcttgacagcttgctttttttcacttgcttctccgaatcagGTTACATATGAGACGACTGGATTTCTAGAGAAGAATAGAGACTTGTTGCATTCGGATTCTATTCAACTTTTGTCCTCTTGTTCTTGCCTCCTTCCTCAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatttgtatctggttggctgccttacattttgattgttccactttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
ttccactttctccatt CT-rich tract
ttacatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaaggggaaaataacgtgtttttatttttatttttttgtaaaaaaatttgtatctggttggctgccttacattttgattgttccactttctccattcagGTCATGTATGATACCACTGGGTTTCTAGAGAAGAACAGAGATTTGTTACACTTGGATTCCATTCAACTTCTATCTTCTTGCACATGCCATCTGCCCCAAA
aaaaggg
- - - - aaaataa
- - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcct