1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...attaattaaaatattgtattctactgttatatgattgattattcttcattttgaatgtgcattttttaacaatgttttcattttctgttcattcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
species | Vitis vinifera |
transcript | Vv10s0003g04630.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG ACTCATGGCCAACTTGAACGGGATGATGAGEST: gi|110698945|gb|EE077019.1|EE077019
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG ACTCATGGCCAACTTGAACGGGATGATGAGEST: gi|30321558|gb|CD004820.1|CD004820
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG ACTCATGGCCAACTTGAACGGGATGATGAGEST: gi|30134857|gb|CB920195.1|CB920195
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
EST: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAG ACTCATGGCCAACTTGAACGGGATGATGAG
genomic: TGAGTCAGGCATTCCGATATGGCATTTATAGTAATGATGATATGGATGAGgtattgttta ... attcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
tcattttgaatgtgcattttttaacaatgttttcattttctgttcattcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
ttttaac putative branch site (score: 2)
ttttctgttcattc putative PPT
attttttaacaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattaaaatattgtattctactgttatatgattgattattcttcattttgaatgtgcattttttaacaatgttttcattttctgttcattcatgcagACTCATGGCCAACTTGAACGGGATGATGAG
- -aattaaa
- - - - - - - - - - ctactgt
- - - - - - - - - - - - - - - - - - - - - - - - - - gaatgtg