1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...aattttaattttaaattttagattttactactttttcatagataaagtagcaaagctgaatgtctcagttttgattattgaagattataattttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCTGAGGAGATCATCACTATTGCTGCCATTCTTTCTGTTCAG
species | Vitis vinifera |
transcript | Vv10s0003g00810.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTA GATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCTEST: gi|110369686|gb|EC933851.1|EC933851
genomic: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTAgtatgttgcc ... ttttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCT
EST: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTA GATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCTEST: gi|33401544|gb|CF207171.1|CF207171
genomic: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTAgtatgttgcc ... ttttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCT
EST: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTA GATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCT
genomic: ATGCCAAACTTACTTCACCTCTTGGGTTTCAAGTTGCAGAGATTCCACTAgtatgttgcc ... ttttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCT
agtagcaaagctgaatgtctcagttttgattattgaagattataattttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCTGAGGAGATCATCACTATTGCTGCCATTCTTTCTGTTCAG
ttttgat putative branch site (score: 4)
ttttttat putative PPT
tcagttttgattattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttaattttaaattttagattttactactttttcatagataaagtagcaaagctgaatgtctcagttttgattattgaagattataattttttatagGATCCAATGATCTCAAAAACGATATTATCTTCAAACCAACTTGGGTGTTCTGAGGAGATCATCACTATTGCTGCCATTCTTTCTGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - caaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgtc