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...tgtttggctgcattctgtacgtcatctatcttgatactatttataataattcatatcttttgccttgtatggttgattattctaatacctctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGGGCTATGTTGGCTCTCATTGATGCTGGACAG
species | Vitis vinifera |
transcript | Vv09s0054g01090.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG GTGTACACAAATCTCCCTGGAGATAAGCCACATAATGTCAATACTGCTTGGEST: gi|33403610|gb|CF209237.1|CF209237
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG GTGTG-ATCAAATCTCCCEST: gi|110415466|gb|EC981375.1|EC981375
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACA-CAAATCTCCC
EST: AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG GTGTACACAAATCTCCCTGGAGATAAGCCACATAATGTCAATACTGCTTGGEST: gi|110701213|gb|EE078556.1|EE078556
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: AGCTTGCTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG GTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGGEST: gi|32459149|gb|CD800323.1|CD800323
genomic: AGCTTGGTTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
EST: CTTGGTTCTCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAG GTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
genomic: CTTGG-T-TCAGGTGGTTGGGGGGAGAGTTATCTGTCATGCCAGAACAAGgtttcgattt ... ctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGG
ataattcatatcttttgccttgtatggttgattattctaatacctctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGGGCTATGTTGGCTCTCATTGATGCTGGACAG
ttctaat putative branch site (score: 2)
tacctcttt CT-rich tract
ttgattattctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttggctgcattctgtacgtcatctatcttgatactatttataataattcatatcttttgccttgtatggttgattattctaatacctctttaaacagGTGTACACAAATCTCCCAGGAGATAAGCCACATAATGTCAATACTGCTTGGGCTATGTTGGCTCTCATTGATGCTGGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
tgtttgg
- - - - -gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttga