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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccaaaatcattcaatatgtattaaatgtgaattctttgtctaaatagaaattcatggatcctttttattgtattcctctcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA

Basic information

species Vitis vinifera
transcript Vv09s0002g07530.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA08G22850.1 (Glycine max), 3'ss of exon 15
gtaccaaaatcattcaatatgtattaaatgtgaattctttgtctaaat--agaaatt-----catggatcctttttattgtattcctctcac-ttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA
|||| ||   | |||| ||     || ||| |       ||||||| |  |  | ||       |||  |  | || |   | |  | |||  ||| ||||| | || |||||||| ||||| ||||| || ||||||||||  ||||||||||| || ||||||||||| || ||||| ||||||||||| |||||||
gtacaaattactttcattagtctctacatg-gtgcatcatgtctaagtttactagttataaatgtggcacagtgttttgacaataatatcatattgcagGCATTAGCTAAGATGATGGCTGTTTGTGGACCCTATCATCGAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTA

upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 17
gtaccaaaatcattcaatatgtattaaatg-tgaattctttgt-------ctaaatagaaattcatggatcctttttattgtattcctctcac-ttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA
|||| ||   | |||   |     |  ||| || ||  ||| |       |||  || ||||   |||  |  | || |   | | || |||  | | ||||| | || |||||||| ||||| ||||| || | ||||| ||  ||||||||||| || ||||||||||| || ||||| ||||||||||| |||||||
gtacaaatcactttcttcagtctctggatggtgcatcatttctaagtttactagttataaat--gtggcacagtgttttgacaatactatcatatcgcagGCATTAGCTAAGATGATGGCTGTTTGTGGACCCTTTCATCAAAATACTGCAAGTGCATATAGTCTTCTAGCTGTGGTTCTCTACCACACTGGAGATTTTA

upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT1G15290.1 (Arabidopsis thaliana), 3'ss of exon 14
gtaccaaaatcattcaatatgtattaaatgtgaattct--ttgtctaaatagaaattcatggatcctttttattgtattcctctcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA
||  ||   || ||  |||  ||    ||    |||||      || ||| |  ||  | |         |  ||  ||| |     |   ||||| | |  |||||||| ||||| ||||| || |||||| |||  |||||| |||| ||||||||||| |||||||| || ||||||||||| |||||||
gtgtcatt-tcttttgatagctacatgatcatcattctaaccaactgaattgttatctaagaga------tgctgacttcttgcatttcctagGCATTAGTCAAGATGATTGCTGTCTGTGGGCCTTATCATAGAAATACTGCATGTGCGTACAGTCTTCTCGCAGTTGTACTATACCACACTGGCGATTTTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30326937|gb|CD010199.1|CD010199
EST:     TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAG                         GCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
genomic: TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAGgtaccaaaat ... tcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
EST: gi|32272114|gb|CD721273.1|CD721273
EST:     TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAG                         GCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
genomic: TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAGgtaccaaaat ... tcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
EST: gi|32248906|gb|CD714725.1|CD714725
EST:     TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAG                         GCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
genomic: TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAGgtaccaaaat ... tcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
EST: gi|32249415|gb|CD715234.1|CD715234
EST:     TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAG                         GCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA
genomic: TTGCGCTTGATAAAGGAAAGCTAGAGGATGCTGTTAACTATGGAACAAAGgtaccaaaat ... tcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttgtctaaatagaaattcatggatcctttttattgtattcctctcacttgaagGCACTGGCAAAGATGATAGCTGTATGTGGTCCATATCATCGAACCACTGCAAGTGCTTACAGTCTTCTAGCAGTTGTTCTTTACCACACTGGGGATTTTA
                                          ctctcac  putative branch site (score: 3)
                         tcctttttattgtatt  CT-rich tract
       taaatagaaattcat  TA-rich tract