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...tttatctaaaaacttaagctgttaagatttaggcctacaatgtatatcatgttcttaacagtttccatatctaacaaaacccgatgacattggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGATGAGAAAAACTCCGCGCCCAGCCGAATGCCAGCAATGGATGATATGGGC
species | Vitis vinifera |
transcript | Vv09s0002g02240.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATACTGCCAG TGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGAEST: gi|33408367|gb|CF213994.1|CF213994
genomic: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAGgtaaagttca ... tggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGA
EST: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATACTGCCAG TGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGAEST: gi|110417690|gb|EC983764.1|EC983764
genomic: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAGgtaaagttca ... tggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGA
EST: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAG TGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGAEST: gi|110420866|gb|EC987151.1|EC987151
genomic: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAGgtaaagttca ... tggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGA
EST: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAG TGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGA
genomic: ATTATAGATCCTCTCAAAGTGGTCAGAACTGCCTTGGTAGATGCTGCCAGgtaaagttca ... tggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGA
atcatgttcttaacagtttccatatctaacaaaacccgatgacattggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGATGAGAAAAACTCCGCGCCCAGCCGAATGCCAGCAATGGATGATATGGGC
atctaac putative branch site (score: 2)
atatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttatctaaaaacttaagctgttaagatttaggcctacaatgtatatcatgttcttaacagtttccatatctaacaaaacccgatgacattggattgcagTGTCTCGCTGCTATTAACAACAACGGAAGCAACTGTTGTAGACCATCCAGATGAGAAAAACTCCGCGCCCAGCCGAATGCCAGCAATGGATGATATGGGC
- - - taaaaac
- - - - - - - - - - - - - - - - gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccgatg