Sequence
atgc intronic sequence ATGC exonic sequencegtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA16G18090.1 (Glycine max), 3'ss of exon 16
gtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
||| | || || | || || | | || | | || | ||||| ||| | | ||||||||| || | ||| | || ||| ||| ||||||| || |||||| |||||||||||||||| |||||||| || | || ||||| ||||||||||||
--gtattgctt----gtatgttcacttatttctaagtttttgtaaatgt---ttaataattcccttc-tattgactttagGTGTACAAAGGGGTTTTCCCTGATGGGAAAATAGTTGCAATCAAACGAGCTCAGCAAGGATCAATGCAAGGAGGCGTAGAGTTCAAGACTGAAATTGAGT
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA08G34790.1 (Glycine max), 3'ss of exon 16
gtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
||| || || | || || | || | | || | ||||||||| | | ||||||||| || | ||| | || ||| ||| ||||||| || |||||| |||||||||||||||| |||||||| || | || ||||| ||||||||||||
--gtattgctttta----tgttcacttatttctaagttcttttaaatgt---ttaataattcctttc-tattgactttagGTGTACAAAGGGGTTTTCCCTGATGGGAAAATAGTTGCAATCAAACGAGCTCAGCAAGGATCGATGCAAGGAGGCGTAGAGTTCAAGACTGAAATTGAGT
upper sequence: Vv08s0056g00100.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT1G79620.1 (Arabidopsis thaliana), 3'ss of exon 16
---------------gtaaattatccaag-ggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
| || | || || || | | || | || | | ||| ||| | | || | |||| |||| ||||||||| | ||| || || ||||||||||||||||| || |||||||| | ||||| |||||||| |||||||| || ||||||
gtgggtttttgaaagatcgatcttgaaactatctagggcttcactttcagggtttgacaagtaacgctcctctgtttctctctgtaatctccgcagGTGTATAAAGGAATGCTTCAAGATGGGCACATGGTGGCGATCAAAAGAGCACAACAAGGATCAACACAAGGAGGGCTCGAGTTCAAAACAGAGATTGAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33406477|gb|CF212104.1|CF212104EST: TAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAG GTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCT
genomic: TAATTTCTCAGAAAGTAATGAGATTGGATCTGGGGGCTATGGCAAGgtaaattatc ... gtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
ttcctttcctggtc CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaattatccaagggcttggtcgactgttgagaaatctggctacacctaacttgctgattcctttcctggtcactttagGTTTATAGAGGAATGCTCTCTGGTGGACAAATAGTGGCGATCAAAAGAGCTCAGCAAGGATCTATGCAAGGTGGGCTCGAATTCAAAACTGAAATTGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG