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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcatctgttgtccttcctgaattatgatagtcaacagtcttccttgaagggatttcgaataaatcattcaaagttcattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA

Basic information

species Vitis vinifera
transcript Vv07s0005g00770.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: LOC_Os03g22160.1 (Oryza sativa), 3'ss of exon 16
-gtacttcatctgtt-gtccttcctgaattatgatagtcaacagtcttccttgaagggatttcg-aataaatcattcaaagttcattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
  |     ||  ||| || |    |  ||| |   |   |  ||| ||  ||       || |  || |||  | || ||   | |    | |     ||||| | ||||||||||||||| | || |||||||| |||||||| || |||||||  || ||||||||||| || ||| ||||   ||||||  | ||||
gctgtgaaataagttagtacgctttatattttagaacggaggagtatttattatcacatttccttaagaaagaactccaaagacttctcatctttgatagATTGGTTGGCTCAATGCAATCCGTGAATGGCAAGAAGAGTTTGTTGGTAACATGAGTTCTAGGGAATTTGTTGATACTATCACCCGAGATCTTCTGGGAA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G353147_T01 (Zea mays), 3'ss of exon 15
-------------------------gtacttcatctgttgtccttcctgaattatgatagtcaacagtcttccttgaagggatttcgaataaatcattcaaagtt-cattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
                          |||     || ||   |||  | | |  |  |  |  |||   |    || || |  || ||  |  |  ||   | |  ||| |  | |     ||||| | ||||||||||||||| | ||||||||||| |||||||| || || ||||  || ||||||||||| || ||| ||||   ||||||  ||||||
gtactatactttatctaatctaatcatacgaatgcttttaagctttat-agtatttctgctttacatattgtactgcagtgggtttgagaattttttttttaatagcataccatctttcatagATTGGTTGGCTCAATGCAATCCGCGAGTGGCAAGAAGAGTTTGTTGGTAATATGAGTTCTAGGGAATTTGTTGATACTATCACCCGAGATCTTCTAGGAA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA03G37450.1 (Glycine max), 3'ss of exon 18
--------------------------------------------------------------------------gtacttca-tctgttgtc-----cttcctgaatta-tgatagtcaacagtcttccttgaagggatttcgaataaatcattcaa------agttcattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
                                                                           ||||  | | |||||||       |  ||   || || ||     |  | | | || ||   | |    ||   | | |  |      |  |  ||   ||| || |||||| |||||||||||||||| |||||||||||||| |||||||| || |||||||  || ||||||||||| |||||| | || | ||||||| | || |
gtaaattatctgtccctgatagactatgatagaaataatcttttaaactttaaagagagattttggtgtagccattactcaagtttgttgtcactagtctgttggcctagtggtaacattcgctttgcattaaaaaaaatcttgatgcctgacttcatgaatgaagtattttcatttcctacagATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACTATTACAAGAGATCTGCTGGGCA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA19G40050.1 (Glycine max), 3'ss of exon 16
------------------------------gtacttcatctgttgtccttcctgaattatgatagtcaacagtc-ttccttgaagggatttcgaataaatcattcaaagttcattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
                                |  | |||| ||   |||    |   |   |       || | || ||  |     |  | | ||    ||  |      |||   ||| || |||||| |||||||||||||||| |||||||||||||| |||||||| || |||||||  || ||||||||||| |||||  | || | ||||||| | || |
gtatattatctgtccctgatagactatgatagaaataatcttttaaactttaaaagagagattttggtgtagccattactcaagtttgtcgccattagtctatgaatgaagtatttcctttcctacagATTGGCTGGCTCAATGCAATTAGAGAGTGGCAAGAAGAGTTTGTTGGCAACATGAGTTCTAGGGAATTTGTCGACACCATTACAAGAGATCTGCTGGGCA

upper sequence: Vv07s0005g00770.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT4G02260.3 (Arabidopsis thaliana), 3'ss of exon 16
gtacttcatctgttgtcct--tcctgaattatgatagtcaacagtcttccttga---agggat------ttcgaataaatcattcaaagttcattct-------------ttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
       || |  || ||   | | ||||||  | ||   | || | | || ||   |||  |      |||   |  | | | | |   | ||| |             | ||  ||||| || | ||||| |||||||| || || ||||||||||||||||| || ||||||| ||| || |||||||| || ||  | || |  ||||| ||||| |
-----gtatttactgaccatattcagaattaaaaaagcagagagacgtgctagatgtaggcgtaatgtgttcctttttaccttcccagtgtgattttagttatgacagtttatttttccagGTTGGGTGGCTAAATGCAATAAGGGAATGGCAAGAGGAGTTTGTGGGTAACATGAGCTCTAGAGAATTTGTGGATACCATTACGAGGGATCTTTTAGGTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352772776|gb|FQ473814.1|FQ473814
EST:     GTTCAAGAGGGAAGACAGGCTGTCTTAACAATGCAAACATTGCTCTAAGG                         ATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAAC
genomic: GTTCAAGAGGGAAGACAGGCTGTCTTAACAATGCAAACATTGCTCTTAGGgtacttcatc ... tttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccttgaagggatttcgaataaatcattcaaagttcattctttttgctccagATTAGCTGGCTCAATGCAATCAGAGAGTGGCAAGAGGAGTTTGTCGGAAACATGACCTCCAGGGAATTTGTAGACACTGTCACTAAAGATCTGTTAGGAA
                                    ttcattctttttgctc  CT-rich tract
                    aataaatcattcaaa  TA-rich tract