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gtacagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG
species | Vitis vinifera |
transcript | Vv06s0004g03450.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAG CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTEST: gi|110383349|gb|EC947717.1|EC947717
genomic: GGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagccat ... gttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
EST: CTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAG CTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
genomic: CTGGGTGCAGTTTCAAATACGGCATCTTACCTCCGACTTTGGGCTTTGAGgtacagccat ... gttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCT
tttccatctgtttatattattatggtttagttgacatctcctactgttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG
agttgac putative branch site (score: 4)
tttatattattatggt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagccatagtttccctctcattttagtcaagtttccatctgtttatattattatggtttagttgacatctcctactgttgttgcagCTTGGCCCACTCTGAATTGTCAACTGTTTTCTATGAGAAAGTCCTCCTCCTTGCATGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC