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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgatttgtgattgcacataaatattttttatttaacattaaggttttcttgtcacaagttgtcctgtgagcaaatttacaagtagtcctattctgcagAAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAG

Basic information

species Vitis vinifera
transcript Vv06s0004g02720.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0004g02720.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA13G40010.1 (Glycine max), 3'ss of exon 16
gttgatttgtgattgcacataaatatttttta---ttta--acattaag--gttttcttg----tcacaagttgtcctgtgagcaaa------tttacaagtagtcctattct-gcagAAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAG
||||||   ||  |     ||  |  || ||    ||||  | ||||||   || | | |    | |  | || |  | | |  |||      ||| |  ||  |    | || |||||||||||| || || || || ||||||||||| |||||||||||||| |||
gttgatcattgcctatgattatgttgttcttgacttttattatattaagccattgtgtagaaacttatgatttctattataaagaaaaatcaatttgctggtgtttggttacttgcagAAATATGCAGCACAGGGAGGGCCTGAGTTCTTTTTCATTGTAAACATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttgtcacaagttgtcctgtgagcaaatttacaagtagtcctattctgcagAAATATGCGGCGCAAGGTGGCCCTGAGTTCTTCTTCATTGTAAACATCCAG
                                          tcctattct  CT-rich tract
                            aaatttacaa  TA-rich tract