1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tctactttctttgccttgcatttttcctctaattttctaggaaccaaacatagcctataggattataagaactaacccgaattatgttgccttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATTTGTGATTCATCACTCCACCCCCATGGTGTTCAATTATTTAT
species | Vitis vinifera |
transcript | Vv06s0004g02050.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGATAGCEST: gi|110361075|gb|EC924528.1|EC924528
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|33405995|gb|CF211622.1|CF211622
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|87583901|gb|DY473272.1|DY473272
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|110362552|gb|EC926095.1|EC926095
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|110363917|gb|EC927549.1|EC927549
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|33406095|gb|CF211722.1|CF211722
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGAGATCGAACTACCTTGGTTAGCEST: gi|83276293|gb|DV940301.1|DV940301
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: TAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|110363719|gb|EC927329.1|EC927329
genomic: TAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCEST: gi|30329378|gb|CD012640.1|CD012640
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
EST: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAG TGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGN
genomic: GAAGCAGGAGCTAAGCATAGGTTGCAGAAGTTGCAGCTCAATTTTCCAAGgttagtcccc ... cttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGC
aaacatagcctataggattataagaactaacccgaattatgttgccttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATTTGTGATTCATCACTCCACCCCCATGGTGTTCAATTATTTAT
aactaac putative branch site (score: 1)
ttgcctt putative PPT
attataagaactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctactttctttgccttgcatttttcctctaattttctaggaaccaaacatagcctataggattataagaactaacccgaattatgttgccttgtgacagTGATGATGTAGCATTTGCACTCAAAGATGACAAGGAACTACCTTGGTTAGCTAAGTATTTGTGATTCATCACTCCACCCCCATGGTGTTCAATTATTTAT
- - - - - - -ccttgca
- - - - - - - - - - - - -cctctaa
- - - - - - - - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgc