1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaaggtttctttgtactcttcagacaactttaccactagtcatccttttccatttccaaccagaatgtaccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACCTTGCAGTCAGCCTGGAAACCGCAAAGTGGGAATTGGCTGATGCTGAGA
species | Vitis vinifera |
transcript | Vv06s0004g00950.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|27580831|gb|CB003526.1|CB003526
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|349815944|gb|FQ403561.1|FQ403561
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|110362164|gb|EC925680.1|EC925680
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|349812081|gb|FQ410878.1|FQ410878
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: CCATGCACTAGAATCTTTAAAAATGAGGATTGCCCCA-AGCGAAAAGCAG ATTACAGTTTGTCTGGCEST: gi|32249956|gb|CD715775.1|CD715775
genomic: CAATGCACTAGAATCTTTAAAAATGAGGATTGCCC-AGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|27579894|gb|CB002589.1|CB002589
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|27581325|gb|CB004020.1|CB004020
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACEST: gi|349808021|gb|FQ402412.1|FQ402412
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
EST: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAG ATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
genomic: ACAATGCACTAGAATCTTTAAAAATGAGGATTGCCCAGAGCGAAGAGCAGgtaaggtttc ... taccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggtttctttgtactcttcagacaactttaccactagtcatccttttccatttccaaccagaatgtaccttgcagATGAAAGTTTGTCTGGCAGAGGCTTTAAAATATACTCAAGAAGACAGACACCTTGCAGTCAGCCTGGAAACCGCAAAGTGGGAATTGGCTGATGCTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG