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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttagagttgcttttgacattatagtgactatgtttattctctctttgtatttttttgtctggattttttattttaaccgtgtaatggttgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG

Basic information

species Vitis vinifera
transcript Vv05s0077g01200.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA07G37040.1 (Glycine max), 3'ss of exon 14
atttagagttgcttttgacattatagtgactatgtttattctctctttgtatttttttgtctggattttttattttaaccgtgtaatggt-tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG
 |  | | ||  |  |    || |  |   ||| | | |  |       |||      |   |      || | || |     | ||| | |  | | ||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||| |||| | || |||| ||||||||| ||| |||||
ttcaatatttattagttgatttgttatatatatatatgtagttatgacttatgggaaggctagtccggcttgtattgattac-tgatgctatcttgtgcagGTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAG

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA17G03570.1 (Glycine max), 3'ss of exon 16
-----atttagagttgcttttgacattatagtgactatgtt-tattctctctttgtatttttttgtctggattttttattttaaccgtgtaatggttgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG
     |||  |||     | |||   ||| |    ||| |  ||||  ||   || |    |  | |  | || | | | |||  | |   ||  |||   | ||||||||||| ||| ||||||||||||||||| ||||| | |||||||||||||||||||| |||| |||| | || |||| ||||||||| ||| |||||
taattattgggaggcatatgtgat-ctatggatgatatatagtattgacttaatggaaggcta-gcccagcttgtatttattactcatactatc-ttg---tgcagGTTAAAGGAATGTTAACAGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAATTTATTGGACTCATGCACATTGTCTGGACCACAG

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA15G15270.1 (Glycine max), 3'ss of exon 15
atttagagttgctt-ttgacattatagtgactatgtttattctc--tctttgtatttttttgtctggattttttattttaaccgtgtaatggttgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG
 | |  |  || |  ||    ||    ||   ||||  | | |   | | || ||| |    | |   | ||||  ||||     ||  |   | || ||||||||| ||| ||||||||||| |||||||| |||||| |||||||||||||||| ||||| ||| || || |||| |||| | ||||||| ||| |||||
-tgtgaaagtgttgattttttttgccatggaaatgtggaatgtaaatatgtggattctgaattttaagtatttttgtttagttaagttct--ctaatgtacagGTTAGAGGCATGATAACAGACTTTGGAGATGACATGCATTGCCAGTTTCTTGAGATTCTTCGCTGTCTATTAGACTCATGCTCATTGTCTGGAGCACAG

upper sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 16
---atttagagttgcttttgacattatagtgactatgtttattctctctttgtat-ttttttgtctggattttttattttaaccgtgtaatggttgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG
   || ||| |||| ||||  | || |  ||    |||  | | |   |  ||   || |   | |  | | |||  |||||   |||  |   | || ||||||||| ||| |||| |||||| |||||||| |||||| |||||||||||||||| ||||| ||| || || |||| |||| | ||||||| ||| |||||
aagatatagtgttgatttt--ctttgtcatggaattgtggaatgtaaatacgtggattctgaatttaaagtattttgtttaattatgttct--ctaatgtacagGTTAGAGGCATGACAACAGACTTTGGAGATGACATGCATTGCCAGTTTCTTGAGATTCTTCGCTGTCTATTAGACTCATGCTCATTGTCTGGAGCACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32248391|gb|CD714210.1|CD714210
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|32267561|gb|CD716524.1|CD716524
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTANAGGTATGATAACAGATTTTGGAGAGGACATGAATTGC
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGC
EST: gi|110711495|gb|EE088040.1|EE088040
EST:     GCGTTCTTATGTCATTCGGCAGGAAG-AATATC-ACCTCNTGGACTTCTG                         GGTAAAGGTATGATA-CAGATTTTGGAGAGGAC-TGAAATGCCA
genomic: GCGTTCTTATGTCATTCGGCAGGAAGGAAT-TCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCA
EST: gi|32272042|gb|CD721201.1|CD721201
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAAT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAAT
EST: gi|32270535|gb|CD719694.1|CD719694
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|32269076|gb|CD718235.1|CD718235
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|30326297|gb|CD009559.1|CD009559
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTC
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTC
EST: gi|32270540|gb|CD719699.1|CD719699
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|30325174|gb|CD008436.1|CD008436
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTANAGGTATGATAACAGATTTTGGAGA
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGA
EST: gi|30324365|gb|CD007627.1|CD007627
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAA
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAA
EST: gi|30325851|gb|CD009113.1|CD009113
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTANAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|30327653|gb|CD010915.1|CD010915
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTANAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
EST: gi|37184362|gb|CF603716.1|CF603716
EST:     TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG                         GTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT
genomic: TGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTGgtatgtgata ... tgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtatttttttgtctggattttttattttaaccgtgtaatggttgatttacagGTTAAAGGTATGATAACAGATTTTGGAGAGGACATGAATTGCCAGTTTCTTGAAATTCTACGCAGTTTACTAGATTCATACACATTGTCAGGATCACAG
     atttttttgtctggat  TA-rich tract