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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA

Basic information

species Vitis vinifera
transcript Vv05s0077g00950.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: LOC_Os01g19450.1 (Oryza sativa), 3'ss of exon 16
-----------gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaa---cttggatcactgcatcatattccactt-caaacgcatagtttcctctgattggtttcttcttaattca--aaacct-------------cagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA-
               ||||  || || || || |    | ||  |   |   || |  | ||    || |||  |    ||   ||||     | ||  |  |    |  | |   ||   ||  ||||||||| | ||  |  ||||  | ||  | |  |||  |             ||||||||| || |||||||||||  | ||||| || || ||||| ||||||||||||||||||||||||||||||||| | |||      ||    | |  | 
gtgagtctcattcttgttgcattccaattgagtgggtatatctatatgaatgttatcttctagctgcttcctttaacattagaataaatggtatagactatagagatacgtccgttttgttaagtcatagtttcttttg--taatttccacatagctgatcaaatttgtcgcttggttcgcagGCACACCTTTGACCAGAAGAGGCTCAAGCAACCACTCTACCGCCACCCATGGGAGGATGTCCTCTACACCAAGTGA-AGACTCGGTTGTTCTTAATATTAC

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G045534_T01 (Zea mays), 3'ss of exon 4
gtaagt--tggcttacacttca--gagtccctttcctttctacctttctggtttattctct---ccctccatttctaccttaaacttggatcactgcatcat--attccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGC-CGACACAA
|| |||  |    | |  || |  || ||       || ||||   |    | || | | |    | |   || |     || | ||  ||   |  | |||   ||  || |  ||  ||     |  | | |   || |    || |||||      ||||||||| ||||||||||||||  | |||||||| || ||||| |||||||||||||||||||| |||||||||||||| |    ||   |   | |  || 
gtgagtcctattctgctgttaattgaatcttcgggtttgctacgcattgattgtaatgtttgggtcttatgttgcagttatatattttcatgttttgaccatttgttatacgtacaagacaagccgttttttaaaatgtgttacattgattca------cagGCACACCTTCGACCAGAAGAGGCTTAAGCAGCCACTCTACCGCCACCCATGGGAGGATGTCCTGTACACCAAGTGAGATAGAGCCATTCTTTGCAAAGCA-

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G002416_T01 (Zea mays), 3'ss of exon 11
gtaagttggcttacacttca--gagtccctttcctttctacctttc--tggtt-tattctct----ccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCC-GACACAA
|| |||   ||| |  || |  || | |  ||    ||| | || |  || || || | | |     | |   || |     || | ||    |  |       |||  | ||  | |    |  ||  |||||      | |  |  | |   |  | |||||| || ||||||||||||||  | |||||||| || ||||||||||||||||||||||| || ||||||||||||||||   |    ||||  | || | 
gtgagtc--cttgctgttaattgaattctctttggctctgctttgcaatgattgtaatgtttggggtcttatgttgcagtaatatattttcccctattttggccatttgatttacagcaagcaacttt-tctgaaaaaaatgtgtt--actttgattcacagGCATACCTTCGACCAGAAGAGGCTCAAGCAGCCACTCTACCGTCACCCATGGGAGGATGTACTTTACACCAAGTGAGAAAGCCATTCTTTGCAAGGCATA-

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA15G15010.1 (Glycine max), 3'ss of exon 15
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgca-tcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                                                | |   |||   ||||  || |    |||     || |    | | ||       ||||   || | || ||  || |||  ||  |     ||| ||||  ||||||||||||| ||||| ||| |||||||||| || || ||||||||||||||||| ||||| |||||||| ||||||| || ||     |  |    | ||
------------------------------------------------tcagaatctaaatccacctccaaacaaaaga-aaataataataattatgcatggtttcattggcttggtctcaactcattcattatt-----atttaaaatttcagGCACACTTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAAGATGTTCTCTACACAAAGTGAGGAAGTTTTGTCTGACTATAAGAA

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA15G15020.1 (Glycine max), 3'ss of exon 16
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                                                   | |    | |   ||  |   |||||||  ||   || ||||    ||||    |||   | | | |    || |    ||| |  | | | ||||  |||| ||||| || ||||| ||| |||||||||| || || ||||||||||||||||||||||| |||||||| ||||||| || ||        | |  | ||
-------------------------------------------------cttgcatgtcttttgttaatcaattaaactgagaat-cttcatcgacctccaaaataaa---aaattatgtcttggtctcattcattgttacttaaaatttcagACACACCTTTGACCAAAAGCGATTGAAGCAACCACTTTACCGTCACCCATGGGAGGATGTTCTCTACACAAAGTGAGGAAGTTTTGTGCGACTGTAAGAA

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA07G36840.1 (Glycine max), 3'ss of exon 17
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcat-catattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                                               |  | || |   |||||  || ||   || |    |  |    || ||||    | ||   ||      |||   || |||  |   |  |||||| | |   ||||||| || || ||||||||||||||||| || || || ||||| ||||||||||||||||| || ||||| ||||||                        
----------------------------------------------ttggactcacgatctccacctccac---aagcacaaacgaaaaaatacatacagtatttgggact-----tttgtactaattcatcgttctttaattaatattttcagGCATACCTTTGACCAGAAGAGATTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTTTACACAAAGTGA------------------------

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA17G03700.1 (Glycine max), 3'ss of exon 15
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                                               |  | || |   |||||  || ||   || |    |  |    || | ||   ||   | |        ||   || |||      |  |||||| | |   ||||||| || || ||||||||||| ||||| || || || ||||| ||||||||||||||||| || ||||| |||                           
----------------------------------------------ttggactcacgatctccacctccac---aagcacaaaggaaaaaat-acat---acacaatatttgggacttgtactaattcaccgttctttaattaatattttcagGCATACCTTTGACCAGAAGAGGTTGAAACAACCACTCTACCGCCACCCATGGGAGGATGTTCTTTACACAAAG---------------------------

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: PP1S46_63V6.3 (Physcomitrella patens), 3'ss of exon 14
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                | |    || |     | |  |   |   | || |     |   |   |   |    |    ||| || | |||||  | ||||| |   || |   |       || ||  || ||  |||| |      |  ||| || || |||||||||||| |  |||||||||| || ||||| |||||||||||||||||  | ||||||||||   | || ||                
---------------gtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtg--tggtatcgttttgcatga-tgcat--tcttccattatcaatgtcgatagaatcctaat--gtatccacttatt---gtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGGGAGGATGTGTTGTACACCAAGT---ACACATAA---------------

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: PP1S46_63V6.4 (Physcomitrella patens), 3'ss of exon 14
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA-----
                | |    || |     | |  |   |   | || |     |   |   |   |    |    ||| || | |||||  | ||||| |   || |   |       || ||  || ||  |||| |      |  ||| || || |||||||||||| |  |||||||||| || ||||| |||||||||||||||||  | ||||||||||     ||  | | |||    |||| |     
---------------gtacgtgatcgcacgtgtgttcattgtaaagcttcaacagattgatttgtg--tggtatcgttttgcatga-tgcat--tcttccattatcaatgtcgatagaatcctaat--gtatccacttatt---gtcctgcagACATACATTCGACCAGAAGCGTCTGAAGCAGCCTCTGTACCGGCACCCATGGGAGGATGTGTTGTACACCAAGT-----ACACATAAATTCATAACACGATCTAG

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: PP1S35_384V6.1 (Physcomitrella patens), 3'ss of exon 14
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccat-ttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattg-gtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAG---AAACTTACAGATTGCCGACACAA
                    |  |   ||  | |||     |  || |  |||   | | |   | || |   |||  | | | |   | |    |  |||      |||   || |      || ||   |||| || | ||      |  ||| ||||| ||||| |||||| |  |||||||||| || ||||||||||| ||||||||||| || ||||| ||||      ||| ||| |    ||  | |   
--------------------gtatgtattcacattc-gtactcatgatcgatttctttcttatttattttgtattagccattgcttgttacg--gttctccttagtgaac-tttaatcaaagatgcttatatttcgtcctgat---ggtctgcagTCACACATTCGATCAGAAGCGTCTGAAGCAGCCTCTGTACCGTCACCCGTGGGAGGATGTTCTGTACACTAAGTACACGTAAATTTATATCAAGCTCAAA---

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: EFJ33298 (Selaginella moellendorffii), 3'ss of exon 15
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAA---ACTTACAGATTGCCGACACAA
                                                                                       |        |||||  |   |    | ||| |  ||       ||   | |  ||        ||||||||| |||||||| ||||||||||| |||||  | ||||| || ||||||||||| || || ||| |    | | |    |   ||||| |  |  |    
--------------------------------------------------------------------------------------gtaagcttccttccaactgttagaagttgttccagctctcaaactttgacattctttg------cagGCACACATTCGACCAAAAGAGATTGAAACAGCCATTGTACCGGCATCCATGGGAGGACGTTCTATACGCTTGATAAAAGGGGAGAGACAGACTTTCCCCT---

upper sequence: Vv05s0077g00950.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: EFJ15935 (Selaginella moellendorffii), 3'ss of exon 15
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgc-atagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA-
                                                                                             |   | |  | |||  |  | |  ||  ||  |    |      || |          ||||||||| |||||||| ||||||||||| |||||  | ||||| || ||||||||||| || || ||| |    | | |     | |||  | |    |   
-------------------------------------------------------------------------------------------gtaagcttccttccaactgttagaagttgttccaagctctcaaactttgacattct-ttacagGCACACATTCGACCAAAAGAGATTGAAACAGCCATTGTACCGGCATCCATGGGAGGACGTTCTATACGCTTGATAAAAGGGG-AGAGACAGGCTTTCCCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27582208|gb|CB004903.1|CB004903
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110426805|gb|EC993228.1|EC993228
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|71885947|gb|DT035002.1|DT035002
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110419495|gb|EC985727.1|EC985727
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|33404107|gb|CF209734.1|CF209734
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTAGTCTCATTGA                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|34363563|gb|CF405148.1|CF405148
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110373416|gb|EC937652.1|EC937652
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTTATACCGTCACCCAT
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCT-ATACCGTCACCCAT
EST: gi|83277433|gb|DV941441.1|DV941441
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110413029|gb|EC978798.1|EC978798
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30255503|gb|CB971635.1|CB971635
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|33402696|gb|CF208323.1|CF208323
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|83275673|gb|DV939681.1|DV939681
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110405782|gb|EC971333.1|EC971333
EST:     GTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110714789|gb|EE092094.1|EE092094
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110382208|gb|EC938777.1|EC938777
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|33402606|gb|CF208233.1|CF208233
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30136932|gb|CB922270.1|CB922270
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110412834|gb|EC978596.1|EC978596
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30303498|gb|CB980292.1|CB980292
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110696244|gb|EE075181.1|EE075181
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|22015052|gb|BQ800086.1|BQ800086
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|33401630|gb|CF207257.1|CF207257
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGNAGATCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|34362821|gb|CF404406.1|CF404406
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30134042|gb|CB919380.1|CB919380
EST:     GGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110703274|gb|EE079977.1|EE079977
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|71882989|gb|DT032044.1|DT032044
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|352764809|gb|FQ471869.1|FQ471869
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|352776495|gb|FQ474797.1|FQ474797
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|46909931|gb|CN545306.1|CN545306
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         ACACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30255121|gb|CB971568.1|CB971568
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110413672|gb|EC979472.1|EC979472
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|30132596|gb|CB917935.1|CB917935
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110372955|gb|EC937153.1|EC937153
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110386438|gb|EC951032.1|EC951032
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|77584692|gb|DV221419.1|DV221419
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110429277|gb|EC995768.1|EC995768
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110700501|gb|EE078609.1|EE078609
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTGATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110385366|gb|EC949884.1|EC949884
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110421610|gb|EC987909.1|EC987909
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
EST: gi|110426539|gb|EC992952.1|EC992952
EST:     GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGG                         GCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG
genomic: GGATATCTGAATGGACTGTTTGTGTTGGCTCGTTCCATTGGTCTCATTGGgtaagttggc ... aaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA
                                    tcttaat  putative branch site (score: 3)
                                   ttcttaattcaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagttggcttacacttcagagtccctttcctttctacctttctggtttattctctccctccatttctaccttaaacttggatcactgcatcatattccacttcaaacgcatagtttcctctgattggtttcttcttaattcaaaacctcagGCACACTTTCGACCAGAAGAGATTGAAGCAGCCCCTATACCGTCACCCATGGGAGGATGTCCTCTACACCAAGTGAGAAACTTACAGATTGCCGACACAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG