1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttattcaacccttgagatacattacggtgcctgtttattgtgtgtcctttatttatatatatttagttcctgatatcctttggggtgttgtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCACG
species | Vitis vinifera |
transcript | Vv05s0051g00870.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAG GGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCEST: gi|161714653|gb|FC062658.1|FC062658
genomic: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAGgtacctttga ... gtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGC
EST: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAG GGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCEST: gi|29783481|gb|CB349670.2|CB349670
genomic: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAGgtacctttga ... gtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGC
EST: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAG GGCATTGCTGTCGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGC
genomic: AAGTTCTTGGGGCATCTATGTGCGGGCCAGACGCACCTGAAATTATGCAGgtacctttga ... gtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGC
tcctttatttatatatatttagttcctgatatcctttggggtgttgtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCACG
tcctgat putative branch site (score: 3)
tcatttc putative PPT
tatttatatatattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattcaacccttgagatacattacggtgcctgtttattgtgtgtcctttatttatatatatttagttcctgatatcctttggggtgttgtcatttcagGGCATTGCTGTTGCACTCAAGTGTGGAGCAACTAAGGCACAGTTTGACTGCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - caaccct
- - - - - - - -agataca
- - - - - - - - - - - - - - tgcctgt
- - - - - - - - - - - - - - - - - - - ttgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggggtg