1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tactattgtgattttgtttgaactagtctttttaaaaggttgcttgactttatatcttaacatttttttgggagcatgacaatggagctgcatgttgcagAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATCAGATTCTAAATCGGCCAAGAGAGCGGTTAAGATTTGCATTCCCAGGAAA
species | Vitis vinifera |
transcript | Vv05s0020g02910.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ACGAAGAGANTGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAG AATTGTTGCGCCAGGCAGGTGTTGGAG--ATCGANCAGCATCTCCAAAGGAEST: gi|30251330|gb|CB969063.1|CB969063
genomic: ACGAAGAAAATGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAGgcaagttaca ... catgttgcagAATTGTTGCGCCAGGCAGGTGTTGGAGGGAA-GA-CAGCATCTCCAAAGGA
EST: ACGAAGAAAATGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAG AATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATC
genomic: ACGAAGAAAATGGAAAGAAGAGCTTGATCAAGAGCTTGAGAAGAAACGAGgcaagttaca ... catgttgcagAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATC
gactttatatcttaacatttttttgggagcatgacaatggagctgcatgttgcagAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATCAGATTCTAAATCGGCCAAGAGAGCGGTTAAGATTTGCATTCCCAGGAAA
tcttaac putative branch site (score: 2)
tatatcttaacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactattgtgattttgtttgaactagtctttttaaaaggttgcttgactttatatcttaacatttttttgggagcatgacaatggagctgcatgttgcagAATTGTTGCGCCAGGCAGGTGTTGGAGGGAAGACAGCATCTCCAAAGGATCAGATTCTAAATCGGCCAAGAGAGCGGTTAAGATTTGCATTCCCAGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - -aaaaggt
- - - - - - - - - - - - - - - - - - - - -gcttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggagct