1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtaataatcctatactggattttcatttttgttttaactgttcattatatttttaggttagtaatatttctgtttctcaatactcataaattgagaacctttctaactaataaattcttggcttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTGCTCAGCTAGCTGAGCTGGAAGTTCTTTACAAGGACGAACAAGTTCTAA
species | Vitis vinifera |
transcript | Vv04s0044g02020.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAG GACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTEST: gi|351043062|gb|FQ443904.1|FQ443904
genomic: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAGgtaataatcc ... ttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCT
EST: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAG GACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTEST: gi|351026499|gb|FQ428511.1|FQ428511
genomic: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAGgtaataatcc ... ttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCT
EST: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAG GACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCT
genomic: CATTACAGAATAATTTAAAGGAATTAGAGGAATTGAGAGAAATGAAAGAGgtaataatcc ... ttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCT
caatactcataaattgagaacctttctaactaataaattcttggcttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTGCTCAGCTAGCTGAGCTGGAAGTTCTTTACAAGGACGAACAAGTTCTAA
cttgctttc CT-rich tract
tttctaactaataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatcctatactggattttcatttttgttttaactgttcattatatttttaggttagtaatatttctgtttctcaatactcataaattgagaacctttctaactaataaattcttggcttgctttcagGACATTGATAGAAAGAATGAGCAAACTGCCGCTATCTTGAAAATGCAAGCTGCTCAGCTAGCTGAGCTGGAAGTTCTTTACAAGGACGAACAAGTTCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG