Sequence
atgc intronic sequence ATGC exonic sequencegtattcttcttcttccttattttttttatttattggtttgtggaaacagttaatttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA17G33930.1 (Glycine max), 3'ss of exon 13
gtattcttcttcttccttattttttttatttattggtttgtggaaacagttaatttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
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----gtttcttcttctttattctactgttatatcag---gtggtttcagttctttctgtttg--gattttggtgtaagctgagttataagcatgtatttcata--cagATACAATTAAAATATTTGGCAGAGGAAATGCAAGCTGTTAGTAAAGGACTGGAGAAAGTAGTTCAGGAATTGACTGCATCAGAGAATGATGGACCTGTGT
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT2G25050.2 (Arabidopsis thaliana), 3'ss of exon 13
gtattcttcttcttccttattttttttatttattggtttgtggaaacagttaatttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
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--------gtacttttatttttctttaactcggtgtttaataatacacctcaattcgaattgtgcctttggtgat-aatctctctgaaaacattcctttatggt--agATTCAACTAAAATACCTGGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTTACTGCATCTGAAACTGATGGTCAAATAT
upper sequence: Vv04s0008g06530.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT3G32400.1 (Arabidopsis thaliana), 3'ss of exon 13
gtattcttcttcttccttattttttttatttattggtttgtggaaacag-ttaatttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
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--------gtacttttatttttctttacctcggtgtttaataaaaacacctcaattcgaattgtgcctttggtgac-aatctctctgaaaacattcc-ttgatg-gtagATTCAACTAAAATACCTGGCAGAGGAGATGCAAGCAACTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTTACTGCATCTGAAACTGATTGTCAAATAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
tattaat putative branch site (score: 2)
ttttatt CT-rich tract
tagatgttttattaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtattcttcttcttccttattttttttatttattggtttgtggaaacagttaatttgatttatagaaaatgcaattgacatgtctctagatgttttattaatgtgcagATACAATTGAAATATCTGGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC