1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gtacacgattcattttatattattcataccatgtttgatgttcttcccctatttctcttagcctattttcaactgttctaataatttctttggataacagCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAG
species | Vitis vinifera |
transcript | Vv04s0008g02740.t01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: AGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAG CATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCEST: gi|110724413|gb|EE100217.1|EE100217
genomic: AGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAGgtattattgc ... tggataacagCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGC
EST: AGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAG CATGCTTCTGGGAAGAAAT-CCAGGAGATACTAGAAGAAGCATTTATTCGC
genomic: AGTTATATCATTATTTATCTTTTGGCTGGCTGTGTGGTGGAATTATTGAGgtattattgc ... tggataacagCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGC
cccctatttctcttagcctattttcaactgttctaataatttctttggataacagCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAG
ttctaat putative branch site (score: 2)
tttcttt putative PPT
ttctaataatttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacacgattcattttatattattcataccatgtttgatgttcttcccctatttctcttagcctattttcaactgttctaataatttctttggataacagCATGCTTCTGGGAAGAAATTCCAGGAGATACTAGAAGAAGCATTTATTCGCCCCCTCCAGATTGAAGGCGAGCTATATGTTGGAATTCCTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - ccatgtt