Sequence
atgc intronic sequence ATGC exonic sequencegtaatctgattttagctggaaatttactcataagagtgagtgatttgtaagaaatggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA09G09670.1 (Glycine max), 3'ss of exon 18
gtaatctgattttagctggaaatttactcataa-----gagtgagtgatttgtaagaa------atggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
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---gtatgacttctattcaatgtccattagtatattataatttgaaaatttagcagaacaacttaaaataaatactctcttctttgaattgtagTGCTTGTGCTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTATATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA11G02850.1 (Glycine max), 3'ss of exon 16
--------gtaatctgattttagctggaaatttac--tcataagagtgagt-gatttgtaagaaatggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
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gtatgacttctattcaatgtccattagtatattataatttgaaaattcagcagaacaacttaaaataaat---actctcttctttgaattgcagTGCTTGTGCTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTGTATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA15G38410.1 (Glycine max), 3'ss of exon 13
gtaatctgattttagctggaaatttactcata------agagtgagtgatttgtaaga-aatggatgataca-gtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
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---gtatgacttctattcaatgtccattagtatattataatttgaaaattcagcagaacaacttaaaataaatactctctttgaattgcagTGCTTGTGGTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTTTGTATGACTGGTGGGAGGATATCTTAGGCGCTGATGAACAAATCATCATGGA
upper sequence: Vv02s0025g04090.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA01G42590.1 (Glycine max), 3'ss of exon 13
gtaatctgattttagctggaaatttactcataagagtgagtgatttgtaagaaa----tggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
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---gtatgacttctattcaatgtctattagtataatttacaaattcagcagaacaacttaaaataaacactcttctttgaactgtagTGCTTGTGCTATTATGGCTTTTGCACCAGAAAGGTCTATTTGATCCTCTATACGACTGGTGGGTGGATATCTTAGGCGCTGATAATCAGATCATCATGGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cataagagtgagtgatttgtaagaaatggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
tttacttt CT-rich tract
atttgtaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctgattttagctggaaatttactcataagagtgagtgatttgtaagaaatggatgatacagtttactttggattgcagTGCTTGTGCTGCTCTGGCTTTTACATCAAAAAGGACTCTTTGATCCTCTATATGACTGGTGGGAGGATCGATTTTGGGCTGACAATCAGAGTATTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA