Sequence
atgc intronic sequence ATGC exonic sequence...aataatggtaaaatagtcttctcaaggaaacatttcctttgaatattggaagactaattttctacttatcatgcctttatatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 16
aataatggtaaaatagtcttctcaaggaaacatttcctttgaatattggaagactaattttc-tacttatcatgcctttatatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
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catgctactttgcaacttttctgtttccctggctttccat-agtattaaataatacacagtcatttttttaattatttaatttaagaaacaaatgatgcagGTTGGGGCAACTCCAGATTTAATGGTAGCATACATTGATTTTTTTCTTGGTGGTGATGAGAAGCGATTAGACATTGTATCAATTATACAGAAGAGATTTC
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA11G04290.1 (Glycine max), 3'ss of exon 16
-----------------aataatggtaaaatagtcttctcaaggaaacatttcctttgaatattggaagactaattttctacttatcatgccttta-tatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
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tttttgtttccctggcttgtattagaatgtaagacctttcaatagag-gtttccac--agtgttaaataatgcagtcattttttttaatctctttaatttaagAAACAAATGATGCAGGTTGGGGCAACTCCGGATTTAATGGTAGCATACATTGATTTTTTTCTTGGTGGTGATGAGAAGCGATTAGACATTGTATCAATTA---------------
upper sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: AT5G47020.1 (Arabidopsis thaliana), 3'ss of exon 17
aataatggtaaaatagtcttctcaaggaaacatttcctttgaatattggaagactaattttctacttatcatgcctttatatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
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-----------gtttggattcttattaactaatat------aatcatgtagctctaagttctcattt----tgactgtctgtgtccaacg-tcgaagtagGTTGGAGCCACTCCGGATCTGATGGTTGCATACATAGATTTCTTCCTTGGCGGTGACGAGAAGCGTGTAGATATGGTCTCTATTATACAGAAAAGATTCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggaagactaattttctacttatcatgcctttatatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
taattttctacttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aataatggtaaaatagtcttctcaaggaaacatttcctttgaatattggaagactaattttctacttatcatgcctttatatgagtggcaattaatgcagGTTGGAGCAACACCTGATTTGATGGTTGCATATATTGATTTCTTCCTTGGTGGTGATGAAAAGCGCATAGACATAGTGTCTATTATACAGAAGAGATTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - ggtaaaa
- - - - - - - - -cttctca
- - - - - - - - - - - - -ggaaaca
- - - - - - - - - - - - - - - - - - - - - - - -ggaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgagtgg