1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...ctccactgaaataattgatgaattgtctttcaacattaggataattttgatgcaattccctattatttgcttctcatagctatacaattgttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGA
species | Vitis vinifera |
transcript | Vv19s0085g00880.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGGATGACCTTCEST: gi|27586388|gb|CB009083.1|CB009083
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351040417|gb|FQ434550.1|FQ434550
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110688026|gb|EE066106.1|EE066106
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAACAAAAGTCCTTCTTGGGGGTAAAAGA-ACAGTCTGGGAATGACCTTCEST: gi|351042224|gb|FQ442691.1|FQ442691
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|30302041|gb|CB978835.1|CB978835
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351028680|gb|FQ446353.1|FQ446353
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAA GGAACAAAAGTCCTTCTTGGGGGTAAAAGACAEST: gi|30128391|gb|CB913730.1|CB913730
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACA
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|29785203|gb|CB341997.2|CB341997
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110712816|gb|EE088195.1|EE088195
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAA-GATGCTGTCTCAAAG GGAGCAAAA-TCCTTCTTGGGGGTAAA-GAAACAGTCCGGGAATGACCT-CEST: gi|77586300|gb|DV222253.1|DV222253
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351018416|gb|FQ439228.1|FQ439228
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|349820783|gb|FQ404157.1|FQ404157
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|34543124|gb|CF511356.1|CF511356
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110363491|gb|EC927084.1|EC927084
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110393201|gb|EC958271.1|EC958271
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110418290|gb|EC984428.1|EC984428
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110728458|gb|EE104042.1|EE104042
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|34543207|gb|CF511439.1|CF511439
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|29785173|gb|CB341929.2|CB341929
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|161716149|gb|FC069492.1|FC069492
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|33407050|gb|CF212677.1|CF212677
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|30134739|gb|CB920077.1|CB920077
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351029837|gb|FQ427677.1|FQ427677
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110693458|gb|EE069709.1|EE069709
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|29781739|gb|CB346445.2|CB346445
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACCCAGTTTGGGAATGACCTTCEST: gi|27586231|gb|CB008926.1|CB008926
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|30251721|gb|CB969454.1|CB969454
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|37190549|gb|CF609898.1|CF609898
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351040173|gb|FQ425259.1|FQ425259
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|110688619|gb|EE067379.1|EE067379
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCEST: gi|351033667|gb|FQ462197.1|FQ462197
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
EST: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAG GGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
genomic: GTTGAATCATTTGTTAAAGATGCTGTCTCAAAGgttctttttc ... ttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTC
tttgatgcaattccctattatttgcttctcatagctatacaattgttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGA
ttttgat putative branch site (score: 4)
tatacaattgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccactgaaataattgatgaattgtctttcaacattaggataattttgatgcaattccctattatttgcttctcatagctatacaattgttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGA
ctccact
- - - -gaaataa
- - - - - - - - - - - - - - - - - - -aggataa
- - - - - - - - - - - - - - - - - - - - - - - - - - caattcc