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gtaaataatagaattgcatatgttttgtcagttctgtatttgattttttatactggttttagttctgaggctatacttgactgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATTTTCTTGTCCCATAATTTTATTCCAGGGATTGGAAGACAAG
species | Vitis vinifera |
transcript | Vv18s0001g11140.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTG GAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATEST: gi|110386297|gb|EC950880.1|EC950880
genomic: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTGgtaaataata ... ctgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAAT
EST: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTG GAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATEST: gi|352777768|gb|FQ466821.1|FQ466821
genomic: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTGgtaaataata ... ctgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAAT
EST: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTG GAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAAT
genomic: GCGAGCGGAAACTCACAAATTTGAGTCTCATTACATTGATAATCTTGTTGgtaaataata ... ctgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAAT
gtatttgattttttatactggttttagttctgaggctatacttgactgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATTTTCTTGTCCCATAATTTTATTCCAGGGATTGGAAGACAAG
gactgac putative branch site (score: 2)
tgattttttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaataatagaattgcatatgttttgtcagttctgtatttgattttttatactggttttagttctgaggctatacttgactgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATTTTCTTGTCCCATAATTTTATTCCAGGGATTGGAAGACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA