Sequence
atgc intronic sequence ATGC exonic sequencegtatgtattaacttttgtaccatctatgattctatctttctgtgtaaattctttttaaatattttacctcctgtatactttttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G20370.1 (Glycine max), 3'ss of exon 15
gtatgtattaacttttgtaccatctatg--attctatctttctgtgtaaattctttt--taaatattttacctcctgtatactt--tttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
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gta-gttttcttttccattcaatctgtttcactttaactaaactacttttttcttttcctaaaagattcttgttatgttttcttcattctaaatgtttttatttttatttttgtaagGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTC
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G34130.1 (Glycine max), 3'ss of exon 15
gtatgtattaacttttgtaccatctatgattctatctttctgtgtaaattctttttaaatattttacctcct--gtatacttt-ttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
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gta-gttttcttttccattcaatctgt--ttcaatttcactaaactacttttttcttttcctgaaagattcttgttatgttttcttgcactctaaatgcttttgtttttgcaagGTGGTTTATATGGACGAGCCAAGTACTGGACTTGACCCTGCATCAAGAAAAAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTC
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA05G01230.1 (Glycine max), 3'ss of exon 16
gtatgtattaacttttgtaccatctatgattctatctttctgtgtaaattctttttaaatattttacctcctgtatactttttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
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----------------gtatgttttagttttcaatccattctaatcatttttctttaaagaagattcaacttgggt-ttccttattctgt-acgtgcaaaattttgtaaagGTTGTTTACATGGATGAGCCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAACTTATGGAATGTTGTCAAGCATGCGAAACAGAACCGTGCAATCATTC
upper sequence: Vv17s0000g05860.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA17G10670.1 (Glycine max), 3'ss of exon 16
gtatgtattaacttttgtaccatctatgattctatctttctgtgtaaattctttttaaatattttacctcctgtatactttttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
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----------------gtatgttttagttttcaatccattctaatcacttttctttaaagaagattcaacttagat-ttccttattctgc-acgtgcaaaattttgtaaagGTTATTTACATGGATGAGCCAAGTTCCGGGTTAGACCCTGCCTCAAGAAAAAGCTTATGGAATGTTGTCAAGCGTGCAAAACAGAACCGTGCAATCATTC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaatattttacctcctgtatactttttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
ttttt CT-rich tract
tatacttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtattaacttttgtaccatctatgattctatctttctgtgtaaattctttttaaatattttacctcctgtatactttttgtggtatgattcttggaatttttggaagGTTGTCTATATGGATGAACCGAGTACCGGATTAGATCCAGCTTCAAGAAACAACTTGTGGAATGTTGTGAAGCGTGCAAAGCAAGGCCGAGCAATAATTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG