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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcttcaaattttttttttttttatcaataaaacatattttcgttatctgtgttggtttcatcctaattctcttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTTAAAAGGGAAAATAAGAATCACCACACGATGCTTATGGCTTGACAAAGGG

Basic information

species Vitis vinifera
transcript Vv17s0000g01640.t01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351049104|gb|FQ431648.1|FQ431648
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|351015920|gb|FQ431875.1|FQ431875
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|351044679|gb|FQ443210.1|FQ443210
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|351044040|gb|FQ431471.1|FQ431471
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|352790717|gb|FQ478265.1|FQ478265
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|351030219|gb|FQ432157.1|FQ432157
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
EST: gi|351013519|gb|FQ425550.1|FQ425550
EST:     TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAG                         CATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT
genomic: TGCATTGATGAGAGACTAAGAATTGCATCAGATGGTATTATCGTAATCAGgtaatcttca ... cttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataaaacatattttcgttatctgtgttggtttcatcctaattctcttggtacagCATGGAAATATTACGCCCTCAAGTTGTAGATGGTGTAACTGAAAAAAGCTTAAAAGGGAAAATAAGAATCACCACACGATGCTTATGGCTTGACAAAGGG
                                   tcctaat  putative branch site (score: 2)
                                         ttctctt  CT-rich tract
     aacatatttt  TA-rich tract