1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gttcaaattgttttgcgagcatgcctacaaccttaaggtgaatccttttttccttccaatatatgcattctgagtctatcttcccatatctgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCGAAATGAAGCTTTGCGAAAATTTGAGAT
species | Vitis vinifera |
transcript | Vv17s0000g01390.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|110693305|gb|EE069430.1|EE069430
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|110715877|gb|EE094430.1|EE094430
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|110386523|gb|EC951123.1|EC951123
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|351027836|gb|FQ448406.1|FQ448406
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|110693717|gb|EE070192.1|EE070192
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|26261768|gb|CA812831.1|CA812831
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCEST: gi|110701577|gb|EE079309.1|EE079309
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
EST: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCAT GGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
genomic: TTTGAAGGTTCAAAAAACTGTGGTGACAAAGCCACCAACTGCGCTTCCATgtatgccttg ... tgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGC
ttttttccttccaatatatgcattctgagtctatcttcccatatctgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCGAAATGAAGCTTTGCGAAAATTTGAGAT
aatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcaaattgttttgcgagcatgcctacaaccttaaggtgaatccttttttccttccaatatatgcattctgagtctatcttcccatatctgttatgcagGGAATTCTCCGAGCAATCTACCCAAAGATAATGATGCTTACTTGGCAAAGCGAAATGAAGCTTTGCGAAAATTTGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - -tgcgagc
- - - - - - - - - - - gcctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttccc