Sequence
atgc intronic sequence ATGC exonic sequence...agagaactctgcatagcttgttgaaacttttattctgagtcaaggcgatgattgttctgctgatcagtgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G13330.1 (Glycine max), 3'ss of exon 15
agagaactctgcatagcttgttgaaacttttattctgagtcaaggcgatgattgttctgctgatcag--tgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
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-ttattttctattaggattcttgggttatagagccctaa-cacattcttgaatgttttatctgttgggacaattttattaattttctccccgttaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCGTATTGTGCTTATCACAG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 15
---agagaactctgcatagcttgttgaaacttttattctgagtcaaggcgatgattgttctgctgatcag--tgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
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ctattaggattct---tgggttatagagccct--aacacattcttgaatgttgaatgttttatctgttgggataattttattaaatttctccccattaaatgcagTTGCATTGTTTGGAGAAAAATGGCAAGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 14
agagaactctgcatagcttgttgaaac--ttttattctgagtca---aggcgatgattgttctgctgatcagtgattgcattt-----tcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
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gtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtagTTGCACTGCTTGGAGAAAAATGGTCGACAGATAACAAAGATGGTGTCGTATTGTTCTTATCACAG
upper sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT4G27910.1 (Arabidopsis thaliana), 3'ss of exon 14
-agagaactctgcat--agcttgttgaaacttttattctgagtcaaggcgatgattgttctgctgatcagtgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
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ttttaatctttacttaaaggaacttgagttttttttttcctttgcaatttattatcttactccatttaaataggcatatttcc---atgcattttgtatgtagTTGCACTGCTTGGAGAAAAATGGTCAGCAGATAACAAAGATGGTGTCCTATTGTGCTTATCACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cgatgattgttctgctgatcagtgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
ttctaat putative branch site (score: 2)
ttttcttcatgccttc CT-rich tract
attttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agagaactctgcatagcttgttgaaacttttattctgagtcaaggcgatgattgttctgctgatcagtgattgcattttcttcatgccttctaattgcagTTGCACAGCTTGGTGAAAAATGGCAGACAGATAACAAAGATGGTTTCATATTGTGCTTATCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - -actctgc
- - - - - - - - cttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgc