Sequence
atgc intronic sequence ATGC exonic sequence...atacctacatttggcatttggtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA14G32500.1 (Glycine max), 3'ss of exon 15
-------atacctacatttggcatttggtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
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gttaagtatacctgcatttgacctttggtaaggttaaataaaagctgtagtttttcac---ttacctgtggtagtgtcttaacattataattgtcatcttta----gGGAGCAAAACCTGGTGAGGGAGGTGAACTTCCTGGCCACAAGGTTATAGGAGACATTGCTGTCACTAGGAATTCAACTGCTGGGGTAGGACTTATCAGTC
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA19G16450.1 (Glycine max), 3'ss of exon 11
-------atacctacatttggcatttggtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
|||||| |||||| | |||||| |||| ||||| | || || || | ||| ||| ||| || | | | | | || | ||| ||||||||| || ||||| |||||||||||||| |||||||| ||||| ||||| ||||| || || |||||||| ||| | || || ||| | ||||| |
cgtaagtatacctgcatttgacctttggtaaggttaaataaaagctatagtttttcac---ttacccatggtagtgtcttgacattataattgtcatcttta----gGGAGCAAAACCAGGTGAGGGAGGTGAACTTCCTGGTCACAAAGTTATAGGAGACATTGCTGTCACTAGGAATTCAACTTCCGGTGTAGGACTTATCAGTC
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G13280.1 (Glycine max), 3'ss of exon 15
----atacctacatttggcatttggtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
|| | || |||||| | || | ||| || ||| | | | | || || ||| | || | | || |||||||||| |||||||| || ||||||||||| || ||||||||| | ||||| ||||| || ||||||||||| || | || || ||| | |||||||
gctcttatatgtatactacatttgatctttgggaaggttgacttttttaattgaacgtggagtactagaatggtatta----ttttaacgcatcttttcatcagGGAGCAAAACCTGGTGAGGGTGGTGAACTTCCCGGCCACAAGGTTGTAGGAGACATTGCTGTCACAAGGAATTCAACCCCCGGTGTAGGACTTATCAGCC
upper sequence: Vv16s0098g00290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G41540.1 (Glycine max), 3'ss of exon 15
---atacctacatttggcatttg-gtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
| || | | | |||| ||| | | || | || ||| | | || || || ||| | || | | | |||||||||| |||||||| || || |||||||| || ||||||||| | ||||| ||||| || ||||||||||| || |||| || ||| | |||||||
ctgagactaaaaaggcacctttgagtgctcttatatgtataccacatttgacctttgagtgctcttagaatggtatta----ttttaacacatctttccttcagGGAGCAAAACCTGGTGAGGGTGGCGAACTTCCCGGCCACAAGGTTGTAGGAGACATTGCTGTCACAAGGAATTCAACCCCTGGTGTAGGACTTATCAGCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
ctgttgtcttcctt CT-rich tract
atgttttaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atacctacatttggcatttggtgaggtcaaatatgaactgagtttatttatattttatggttggacatgttttaaaactgttgtcttccttgttacatagGGAGCAAAGCCTGGTGAAGGAGGTGAACTTCCGGGTCACAAGGTTATTGGAGATATTGCAGTTACAAGGAATTCCACTGCTGGGGTGGGATTGATCAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- acctaca
- - - - - - ggcattt
- - - - - - - - - -ggtgagg
- - - - - - - - - - - - - - - -tatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaactg