Sequence
atgc intronic sequence ATGC exonic sequence...gttccctctttacttcaactgtagaattctccaagtttttatcatgtttcttttgtcataagaatgaattttctgtatctgtcgcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G040158_T03 (Zea mays), 3'ss of exon 15
--gttccctctttacttcaactgtagaattctc--caagtttttatcatgtttcttttgtcataagaatgaattttctgtatctgtcgcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
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tattactttgcttgatctcggtttagcttctttagcatgctttaaggacatttcattta--gtaaagctgcactctcta-acgacttttctttttat-tttaagGTTGAAGCCATTCGCAATCTATTTGCAGCACTCTTCCTTGCAAGCATTGGAATGCTCATACATGTTAAGTTCTTGTGGAATCATGTTGACATATTACTTG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 9
gttccctctttactt-caactgtagaattctccaagtttttatcatgtttcttttgtcataagaatgaa----ttttctgtatctgtcgcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
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----taggataatttactgcttttgaattatg-aactatgaactatgtttcagttgtcacaagattaaagaaaaacgttctcttaaaagtgcatatttgttgtagGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTCATACATGTGCACTTCCTTTGGAACCATGTGGATATTTTGTTGG
upper sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA09G27940.1 (Glycine max), 3'ss of exon 16
gttccctctttacttcaactgtagaattctccaagtttttatcatgtttcttttgtcataagaatgaattttctgtatctgtc---gcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
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--aatgtgtttaggataatt-tactgcttttgaattatgaactatgtttcagttgtcacaagattaaagaaaaaagttctcttaaagtgtatatttgttgtagGTGGAACCAATTCGTAACCTATTTGCAGCTCTCTTTCTCTCAAGTATTGGAATGCTTATTCATGTGCACTTCCTTTGGAACCATGTGGATATCTTGCTGGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110426017|gb|EC992414.1|EC992414EST: TGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAG GTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGA
genomic: TGGGGTTATGATATCTACGACTGACTTTGCGCAACATACTTTGGACCAGgtaaatcaag ... tatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcttttgtcataagaatgaattttctgtatctgtcgcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
tctgtcgcttttct CT-rich tract
ataagaatgaatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttccctctttacttcaactgtagaattctccaagtttttatcatgtttcttttgtcataagaatgaattttctgtatctgtcgcttttctatgttctagGTTGAACCGATCCGGAACCTATTTGCAGCTCTCTTCCTTTCAAGTATTGGAATGCTCATACACGTGCAGTTCCTATGGACCCATGTGGATATATTGCTAG
- -ccctctt
- - - - - - cttcaac
- - - - - - - - - - - - - - ctccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataagaa