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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttgtgctgtgagtttttgagttcttgttacttcattttaaactttgatgcccaatgtcacagatacaactgccctatttgttctgaaagagcttatttttgttggactgccagAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTT

Basic information

species Vitis vinifera
transcript Vv16s0022g02030.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA09G27950.1 (Glycine max), 3'ss of exon 15
gtaagttttgtgctgtgagtttttgagttcttgttacttcattttaaactttgatgcccaatgtcacagatacaactgccctatttgttctgaaagagcttatttttgttggactgccagAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTT
                       |  |||     ||||  |||| | ||||   |      | | | ||  |    | ||| ||| ||  ||  |      | |||||||||| | |||||||||||||  |||||||||||||||| || |||||  ||||  |||| |  ||  | |||||||| || ||
----------------------gtatgtttcatctactgtattt-atacttatttcattttttttatagtaaatttttcccaattagtaatgtgatgaaaaagttttgttggatttccagAAATCTTTCTGCAAACAATTTCAAAGGGAGTATACCTGTTGATTTGGGCCATATAATAAATCTTGACACATT

upper sequence: Vv16s0022g02030.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA16G32830.1 (Glycine max), 3'ss of exon 16
gtaagttttgtgctgtgagtttttgagttcttgttacttcattttaa-actttgatgcccaatgtcacagatacaactgccctatttgttctgaaagagcttatttttgttggactgccagAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTT
||| ||||  |     |  | |||    |  | | | ||  |||||  |  ||  | |||||  | |   ||   |               ||||| ||     |||||||||| | |||||||||||||  ||||||| |||||||| || |||||  ||||| |||| |  ||  | |||||||| ||  |
gtatgtttcatctcccg--tatttagacttgtttcatttttttttagtaaatttcttcccaac-ttattaatgtga---------------tgaaaaag-----ttttgttggatttccagAAATCTTTCTGCAAACAACTTCAAAGGGAGTATACCTGTTGAGTTGGGCCATATAATAAATCTTGACACGCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acagatacaactgccctatttgttctgaaagagcttatttttgttggactgccagAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTT
                                  ttatttttgtt  TA-rich tract