Sequence
atgc intronic sequence ATGC exonic sequence...aaaacaaatatttgtaatgcttaggaaaaactcatggataataggtcttcttgctcacagtggaaatgagggctgacgattctgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os07g23990.1 (Oryza sativa), 3'ss of exon 13
aaaacaaatatttgtaatgcttaggaaaaactcatggataataggtcttcttgctcacagtggaaatgagggctgacgattctgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
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----------------gtacaaatgtatatttgatgaatcatttacaat-ttgctc-tatttgaattga----tgttaattgttaatttcttaccttcagGTTGGCATTGAACTGGCACCCCGAGATTTTGTTATGGATTCTGCTTTCCCATTTCAAAAACAAGACATTATTAGCTTGGTACCAGTACACAAG
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA07G06160.1 (Glycine max), 3'ss of exon 14
-------------------------aaaacaaatatttgtaatg-cttaggaaaaactcatggataataggtc--ttcttgctcacagtggaaatgagggctgacgattc--tgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
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gtgaccttatcaacataactggattcatcttctcatatgaagtggttcataagactcttatgttaaatcagcaaactctttccttctctctcattgacagtttgttgcttatcatcactttctgtgctagGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCCCCAATTCCCTTTCAAAAATCTGATATTGTCAGCTTGGTCCCT---------
upper sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 15
---aaaacaaata-tttgtaatgcttaggaaaaactcatggataataggtcttcttgctcacagtggaaatgagggctgacgattctgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
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ctcatatgaagtggttcataagactcttgtcttaaattcagcaaactctttctgtctctctcattgacagtttgtttct----tatcatcactttctgtgttagGTGGGAATTGAGCTTGTTCCAAGGGATTTTGATATGGATTCCCCAATTCCCTTTCAAAAATCTGATATTGTCAGCTTGGTCCCTGTTCACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttcttgctcacagtggaaatgagggctgacgattctgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
cgattctgcctttttc CT-rich tract
tttttcttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaaacaaatatttgtaatgcttaggaaaaactcatggataataggtcttcttgctcacagtggaaatgagggctgacgattctgcctttttctttttcagGTGGGAATTGAGCTAGTTCCAAGGGATTTTGATATGGATTCTCCATACCCTTTCCAAAAACTTGACGTTATTAGCTTGGTACCAGTGCATAAG
-aaacaaa
- - - - - - -gtaatgc
- - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgcct