Sequence
atgc intronic sequence ATGC exonic sequencegttagcccattgttttcatttagcttatccagtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA03G39760.1 (Glycine max), 3'ss of exon 15
gttagcccattgttttcatttagcttatccagtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG
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gttggt---ttgtttttgccttgctt-tgcttttcttagcatcaattattttcagaaatataaagtaatttatgtatgttgtacttgcagTCTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGACCAGGAGCTTGAGAGAAAGCGAG
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA19G42340.1 (Glycine max), 3'ss of exon 15
gttagcccattgtt--ttcatttagcttatcca-gtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG
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gttggtttgtttttgccttgctttgcttttctaagcatcgattattttcagaaatataaagtaat-tgaagaactata-tgttgtacttgcagTCTAAGCTTTTCTGAGAGACAGAGGAAGTGGAAAGAAGAGCTCGATCAGGAGCTTGAGAGAAAGCGAG
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT1G54960.1 (Arabidopsis thaliana), 3'ss of exon 15
----------gttagcccattgttttcatttagcttatccagtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgctt-gcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG---
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cttaagatatgattgccctccattgctagc-aattggttcaatggtgacatttatctccttttcttaaacatctggaattgagttgtttttggctttgcagTGTCGCGCTGTCGGAGATAGAGAGGAAGTGGAAGGAAGAGCTTGATCAAGAACTTGAAAGAAAGCGAAGAG
upper sequence: Vv14s0128g00430.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT1G09000.1 (Arabidopsis thaliana), 3'ss of exon 15
---------gttagcc--cattgttttcatttagcttatccagtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG---
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agcctagctattgaccagcaacgatttaaatctg-tcacttagtctaggcttcttgtttcattcctgaatctgcttgaattggctggttttggctttgcagTGTTGCTTTGTCAGAGATAGAGAAGAAGTGGAAGGAAGAGCTTGATCAAGAACTGGAAAGAAAGCGACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG
ttttttactatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagcccattgttttcatttagcttatccagtgtttggtgtcttttttactatcaagccatctgaaatacaaaagtgtgctgcttgcagTGTGAGCTTTTATGAGATACAGAGGAAGTGGAAGGAGGAGCTTGACCAAGAACTAGAGAGAAAACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC