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...ggataacctgaagctgcgccatgtctatttctgtgattgaaattcaaattatcttttatctttttccttgaagaaaatctgaagtttgttaaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGACAGTCTGCCCTTGATAACTTGGAAGAGTTCCAGGAAGCAGCAAAGAGCA
species | Vitis vinifera |
transcript | Vv14s0068g00720.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGAEST: gi|110381283|gb|EC946607.1|EC946607
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGAEST: gi|161721331|gb|FC070058.1|FC070058
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAEST: gi|30256375|gb|CB972218.1|CB972218
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGA
EST: CTTTGGTTGATGTTGAAGCTGGTACAAGCATCAATGCAGCCATGTTGAAG GAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
genomic: CTTTGGTTGATGTTGAGGCTGGTACAAGCATCAATGCAGCCATGTTGAAGgtttgtaaac ... aaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGA
aaattatcttttatctttttccttgaagaaaatctgaagtttgttaaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGACAGTCTGCCCTTGATAACTTGGAAGAGTTCCAGGAAGCAGCAAAGAGCA
aagtttgttaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggataacctgaagctgcgccatgtctatttctgtgattgaaattcaaattatcttttatctttttccttgaagaaaatctgaagtttgttaaaatttcagGAAGGGCTTGCAAGGTTGGAAAGAAAGAAGAGGCGGGACTCCAGAGAGAGACAGTCTGCCCTTGATAACTTGGAAGAGTTCCAGGAAGCAGCAAAGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
ggataac
- - - - tgaagct
- - - - - - - - - ccatgtc
- - - - - - - - - - - - - - - - - - - -aaattcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa