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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatgctgcttttgaaagtttgtttgcacatttattcaaagctagaaattcattactcttgttcgtttgattagGATTTGATGGAAAAAACTATTGTCCTTGCTTTGGCAACTGGTCAGAAGCGATTTAGTGCGTCTTTGTATAAGCTTGTTGAGAAATATTCTGAAATACTAG

Basic information

species Vitis vinifera
transcript Vv13s0158g00140.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA12G01290.1 (Glycine max), 3'ss of exon 15
-----gtaagtatgctgcttttg-aaagtttgtttgcacatttattcaaagctagaaattcattactcttgttcgtttgattagGATTTGATGGAAAAAACTATTGTCCTTGCTTTGGCAACTGGTCAGAAGCGATTTAGTGCGTCTTTGTATAAGCTTGTTGAGAAATATTCTGAAATACTAG
      |     ||   || ||  ||| ||    |  ||   ||||    |||||||| |    |   || |    ||  ||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||| |||||||| ||| |||  |||||||||||||||||| |||||||  |||
gtaagattgacctgtaactgttataaaattctcatttaccaatatt-gctgctagaaaattgacatgattatc---tttgttagGATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCGGTTTAGTGCTTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAG

upper sequence: Vv13s0158g00140.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA09G36050.1 (Glycine max), 3'ss of exon 15
------------gtaagtatgctgcttttgaaagtttgtttgcacatttat-tcaaagctagaaattcattactcttgttcgtttgattagGATTTGATGGAAAAAACTATTGTCCTTGCTTTGGCAACTGGTCAGAAGCGATTTAGTGCGTCTTTGTATAAGCTTGTTGAGAAATATTCTGAAATACTAG
             |     ||  ||| ||  ||  ||  | ||  |    | |    |||||||| |    |   || |   ||   ||||||||| |||||||| |||||||| ||||| ||||||||||| |||||||  |||||||| ||| |||  |||||||||||||||||| |||||||  |||
gtaagattgaccctcttgttgtagctgttataaaatt-ctcgcttaccagtattgctgctagaaaattgacaagattatctatt--gttagGATTTAATGGAAAAGACTATTGTTCTTGCCTTGGCAACTGGGCAGAAGCAGTTTAGTGCTTCTCTGTGCAAGCTTGTTGAGAAATATGCTGAAATTTTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtttgcacatttattcaaagctagaaattcattactcttgttcgtttgattagGATTTGATGGAAAAAACTATTGTCCTTGCTTTGGCAACTGGTCAGAAGCGATTTAGTGCGTCTTTGTATAAGCTTGTTGAGAAATATTCTGAAATACTAG
                                          ttcgttt  CT-rich tract
          atttattcaaa  TA-rich tract