Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaacttgttatttgtttttttatccttattgaatatcatggcatgtttatttataaaatttattactatattttgcttcatttcactgttgcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G00430.1 (Glycine max), 3'ss of exon 13
--------------------------------gtaaaaacttgttatttgttttttta-tccttattgaatatcatggcatgtttatttataaaat--ttattactatattttgcttcatttcactgttgcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
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gtaaaaacctttttagctcttgcctttatcaattggaatgatgtggatcgtcaaagaagttctgagcagtgttcatagcttatcaagtatcaatatgtttgtagtcttattttcttgtgacttttttatgcagTGTGGAATCCCAGGAAGTGCTTGATGCTGAACTTTCAGCTCGAGTTTTACAGTTGATAAATGTAACTGATAGTGGAATACACAGTCAG
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 7
--------------------------------gtaaaaacttgttatttgttttttta-tccttattgaatatcatggcatgtttatttataaaatttattactatattttgcttcatttcactgtt----gcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
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gtaaaaacctttttagctcttgcctttttcaattggaatgatgtggatcgccaaagaagttctgagcagtgttcatagcttatcaagcatctcaatttgtttgtagtcttattttcctgtgacttttatacgcagTGTGGAATCCCAGGAAGTGCTTGATGCTGAACTTTCAGCTCGAGTTTTACAGTTGATAAATGTAACAGACAGTGGAATACACAGTCAG
upper sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT5G06120.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaaaaacttgttatttgtttttttatccttattgaatatcatggcatgtttatttataaaatttattactatattttgcttcatttcactgttgcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
|| ||| ||| | || | ||| || | ||| ||||| | ||| | || | ||| || || | |||||||||||| | ||||| || ||||||||||||| || ||||||||| ||| | || ||||||||| ||||||||||| || || |||
---gtaagttgatatcatatcttggggtttctttgcattt--tggtctgtttgaagaacaaaataatatatggattgaaatttatacgtattttgcagTGTGGAGACGCAAGAGGTGCTTGATGCTGAACTCTCCGCTCGTGTTTTGCGGCTAGTAAATGTTATGGACAGTGGACTGCATAGACAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggcatgtttatttataaaatttattactatattttgcttcatttcactgttgcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
tttcact CT-rich tract
tttatttataaaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaacttgttatttgtttttttatccttattgaatatcatggcatgtttatttataaaatttattactatattttgcttcatttcactgttgcagTGTGGAATCACAAGAAGTAATTGATGCTGAACTTTCAGCTCGTGTTCTGCAGTTAATAAATGTTACTGACAGTGGACTACACAGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA