Sequence
atgc intronic sequence ATGC exonic sequence...gtgacatgcttcataggactgaacagtattgggcatcgttgcaatttgcaagatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 15
gtga-catgcttcata---ggactgaacagtattgggcatcgttgcaatttgcaagatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
|||| || | ||| | | | | |||| || || | || || | | || || | ||| | || ||| | ||| || ||||||| || |||| |||||||| || || || | | |||||| |||||||||||||||| ||||||| ||| |||||||| |||
gtgaacacgtagaatatactgtgtacataaaattgtatctcattacttgtttcacaaga--gagctatca--tgtgctaatgtacttacttttgcata-ttcagAGAAATCTGATCCGTGAAGCGACTGCTTTCCTTCTGGATGTTCTGAAGCCAAATTTACCCGAGCATGCTTTTCTGCAAACTAAG
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 15
---------------------gtgacatgcttcataggac-tgaacagtattgggcatcgttgca-atttgca------agatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
| || || ||| | | | || | | | | || | ||| | ||||| |||||| || | ||||| | | |||| || || ||||||| || |||| |||||||| || | || | | ||||| | |||||||||||||||||||||| ||| |||||||| |||
gtaggtcaatatattctgtatgcaccaatatttgtagctcattacttgttctactcctatatacagaattgtatacagtagatgt-aaattatca--tgtgcttatttgtctatttgtgcata-ttcagAGAAATCTGATCCGTGAAGCGACTTCTTTCCTTCTGGATGTGCTAAAGCCAAATTTACCTGAGCATGCTTTTCTGCAAACTAAG
upper sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: EFJ24508 (Selaginella moellendorffii), 3'ss of exon 15
gtgacatgcttcataggactgaacagtattgggcatcgttgcaatttgcaagatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
| | | | | ||| | | | | | | || |||||| ||| | | || | ||||||||||||||||||||| | ||||| | |||||||||||||| || | || ||||||| | |||| ||||||
--------------------------------gtacttctttcacgtataagtttgtatgaaatcggctgatattg----tttatttctgtcatgcttagCGAAACTTGATACGTGAAGCAACATCCTTTTTACTGGATGTTTTGAAGCCGAACCTTCCCGAGCATGCGATGTTGCAGACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122689653|gb|EC942290.1|EC942290EST: AGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAG AGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCA
genomic: AGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAGgtttgttatg ... tattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgcaagatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
tattcttc CT-rich tract
ttaagtctttattatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgacatgcttcataggactgaacagtattgggcatcgttgcaatttgcaagatgccaaattaccaattaagcttaagtctttattattgtattcttcagAGGAACTTGATACGTGAAGCAACAGCATTTTTGTTAGATGTTTTGAAGCCAAATTTACCTGAGCATGGTTTCCTGCAAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- -acatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaaatt