Sequence
atgc intronic sequence ATGC exonic sequencegtaaagtgaaatttttgtcttccctattttgaaggggggtaattttcctaatatgatcaatttaatgaaaatgtggattgacatgtttatacagtgaagtttcacttcttttgctctgctctgtaaataaatagtttctcttatcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA20G32370.1 (Glycine max), 3'ss of exon 17
gtaaagtgaaatttttgtctt--ccctattttgaaggggggt--aattttcctaatatgatcaatttaatgaaa--atg--tggattgacatgtttatacagtgaagtttcacttcttttgctctgctctgtaaataaatagtttctcttatcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
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gtaaattttaaattggataataatcttactaagatatgatgtttaactcttcta-tattaagcactagatgatatgatgcctggactaata-gtttctgtgtttgggcaatattttattgactatacttgatggtttgatggtt---------agagaacatggatgtgttccc---tgacttt--tgtatctattttattctagGTGCTTGGCTGGGCACGAGCAATGCCCAAGTTCTCTAATGATCTTGTGAAGTATGTGCAAACTTTTCTGGAGAGGACTTATGAAAGATGCCGGACTGCAT
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA10G35190.1 (Glycine max), 3'ss of exon 18
gtaaagtgaaatttttgtcttccctattttgaaggggggtaattttcctaatatgatcaatttaatgaaaatgtggattgacatgtttatacagtgaagtttcacttcttttgctctgctctgtaaataaatag--tttctcttatcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
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--------------------------------------------------------------------------------------------------acattattttattgactatacttgattgatgctttgcatttcatttgatggttagagaacatggatgtgttccctaactt-ttgtatctattttattctagGTGCTTGGCTGGGCACAAGCAATGCCCAAGTTCTCTAATGATCTGGTGAAGTATGTGCAAACTTTTCTGGAGAGGACTTATGAAAGATGCCGAACTGCAT
upper sequence: Vv13s0019g04770.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT3G10380.1 (Arabidopsis thaliana), 3'ss of exon 17
gtaaagtgaa-atttttgtcttccctattttgaaggggggtaattttcctaatatgatcaatttaatgaaaatgtggattgacatgtttatacagtgaagtttcacttcttttgctctgctctgtaaataaatagtttctcttatcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
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gcaagtcgtctatgctttaaaactgcaagataaaagtttttatttttcataattt--tcatcttcctaaaagaatggattagttgagtggttacttccagtt---catcatttaatccatttttgttttctcaagtttca------agatatttgtgttttga---tgaaactacttgctcttcaaatttta---tagGTTCTTGGCTGGGCTCAAGCCATGCCTAAATTTGCTACTGATCTTGTGAAGTATGTTCAGACATTTCTTGAGAGGACATTTGAGAGATGTCGAACATCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
ttttactct CT-rich tract
ataaatttactgaatg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaagtgaaatttttgtcttccctattttgaaggggggtaattttcctaatatgatcaatttaatgaaaatgtggattgacatgtttatacagtgaagtttcacttcttttgctctgctctgtaaataaatagtttctcttatcagttatttttacagtaagcctacataaatttactgaatgtattttactctagGTGCTTGGTTGGGCTCAAGCAATGCCTAAATTTGCTGGTGACCTTGTGAAGTATGTGCAGACTTTCCTTGAACGAACCTATGAAAGATGTCGGACATCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG