Sequence
atgc intronic sequence ATGC exonic sequencegcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgcattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA10G35210.2 (Glycine max), 3'ss of exon 15
gcaaggatgtacatgcca--aatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgc-attttagagaaattttttacttctgcatcttcc------------taaatcttctttta-----------------------attt----tttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
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gcaagctttcatgcttcattgatactttgtcctattcctttttttcattttgttacttttgtagatccttggaaattactaacctaaaatattattccctttctgccttttgtacaatatactagcaaatgttattttggagtacttagtgtattcttatatatttgtgacttccaatttatagGAGAGAACTACTCCACAGCTATGGATTTGAGCACATAGCAATGCTAAACAATTTAGAGAAAGCTGGACTTTTTAAAAAGCAG
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT3G54860.1 (Arabidopsis thaliana), 3'ss of exon 15
gcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgcattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
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-------------------------------------------gcaagttaagcttccgtcagtcattctgtattatatatttca---attttctgttttttt-tttaatcatatcttgtcttcgggtct--caactttcagAATGGAACTACTCCACAGTTATGGGTTTGAGCATGTGGTTACACTGAACAACTTGGAAAAAGCAGGATTGTTGAAGAAGCAG
upper sequence: Vv13s0019g04720.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: PP1S26_105V6.1 (Physcomitrella patens), 3'ss of exon 15
gcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattg--cattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
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---------------------------------tattgtgtagttgcattcaattt-------gtattgagcattggtcatccttggaaagttgcaaaaggtatcatccaatgagaatcgcttt----tcctactttgctgcagGAGAGAACTTTTGCATAGCTATGGATTTGAGCACATGTTTACTCTAAGCAATTTAGAGAAAGCTGGCTTGCTCATAAAACAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30132609|gb|CB917948.1|CB917948EST: TTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAG GAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACGCTGAACAA
genomic: TTTTCAATTACAAATTCAGGGTTACCAAAGAGAAATTTTGATTATTTGAGgcaaggatgt ... catggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
tcttcttttaattttt CT-rich tract
taaatcttcttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gcaaggatgtacatgccaaatcatttttctaataatttagatgtcactttttgttacagcaggatattgagaattgcattttagagaaattttttacttctgcatcttcctaaatcttcttttaattttttccatggtttagGAGAGAGTTACTCCACAGCTATGGATTTGAGCACATGGCTACACTGAACAATTTAGAAAAGGCTGGATTGCTTAAAAAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA