Sequence
atgc intronic sequence ATGC exonic sequencegttcttttttctgttttttttttcatggttcctgacttcaacttgatttgttgaattggttaagttttagagccaatcttccattgaaactctctattgttacagGATGTTATACAGTTTGGGCCTCTTGTCAAGACATTAGGCCTTGTTATGCTGAGTAAACCTCAAATTCTTCCATCAATTTTCAAGCAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA14G05100.1 (Glycine max), 3'ss of exon 16
---------------------------------gttcttttttctgttttttttttcatggttcctgacttcaacttgatttgttgaattgg--------------ttaagttttagagcca--------atcttccattgaaactctctatt----gttacagGATGTTATACAGTTTGGGCCTCTTGTCAAGACATTAGGCCTTGTTATGCTGAGTAAACCTCAAATTCTTCCATCAATTTTCAAGCAG
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gtggacttcttgtcccggtctgaaactctggatatgttttttgctttgtctttgtgagatgttcttcacaaaatattctttaattgagatgagaaccaaaccaatatcaaatttcaaacctggaacaatgactgtcctgaggaattatccattatttattacagGATGTTGTACAGTTTGGTCCACTTTCCAAGACATTGGGCCTAGTTATGTTAACAAATCCTAAAATACTCCCATCCATATTCAAACAG
upper sequence: Vv12s0059g01150.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT2G32640.1 (Arabidopsis thaliana), 3'ss of exon 14
-----gttcttttttctgttttttttt-tcatggttcctgacttcaacttg-atttgttgaattggttaagttttagagccaatcttccattgaaactctc----tattgttacagGATGTTATACAGTTTGGGCCTCTTGTCAAGACATTAGGCCTTGTTATGCTGAGTAAACCTCAAATTCTTCCATCAATTTTCAAGCAG
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gtatagtacacttttctaaaccgggaaatgagagtttcgaactttggcttctaagtaatggtttcatatttctcttgtagAGATTGGGCGATCCAGTTCTCAGACCATTTCTTCAGGATATAATACAGTTTGGTCCTCTAGCAAAGACATTAGGCCTTGTCATGCTGACCAAACCTCAGA----------------------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaattggttaagttttagagccaatcttccattgaaactctctattgttacagGATGTTATACAGTTTGGGCCTCTTGTCAAGACATTAGGCCTTGTTATGCTGAGTAAACCTCAAATTCTTCCATCAATTTTCAAGCAG
ctctctatt CT-rich tract
ttaagtttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttcttttttctgttttttttttcatggttcctgacttcaacttgatttgttgaattggttaagttttagagccaatcttccattgaaactctctattgttacagGATGTTATACAGTTTGGGCCTCTTGTCAAGACATTAGGCCTTGTTATGCTGAGTAAACCTCAAATTCTTCCATCAATTTTCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG