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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcccttgtcatttctcatattttgaacatctatgattgtggaattgtatcctgagatcatatgtttaatcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGAATTGGTGCAATTCTGGGTCTAGGTCTTGCTTATGCCGGTTGTCAAAATG

Basic information

species Vitis vinifera
transcript Vv12s0028g03130.t01
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30304134|gb|CB980928.1|CB980928
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCTATCCA                         GCATTGGCACTTTT-GANTGATTACATAGGCAAAGAGGATCCATCAATCCG
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGC-TGATTACATAGGCAAAGAGGATCCATCAATCCG
EST: gi|71864029|gb|DT013084.1|DT013084
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|30304206|gb|CB981000.1|CB981000
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|110707945|gb|EE084922.1|EE084922
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|30305222|gb|CB982016.1|CB982016
EST:     AGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGC-AAGANGGATCCATCAATCCG
genomic: AGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGA-GGATCCATCAATCCG
EST: gi|30305288|gb|CB982082.1|CB982082
EST:     ATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: ATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|71860625|gb|DT009680.1|DT009680
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
EST: gi|71863903|gb|DT012958.1|DT012958
EST:     TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCA                         GCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA
genomic: TATTAGGGGTTGGGATTGTCAATTGTGGCATTAAGAATGATTGCGATCCAgtaagttccc ... tcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacatctatgattgtggaattgtatcctgagatcatatgtttaatcttcttcagGCATTGGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGAATTGGTGCAATTCTGGGTCTAGGTCTTGCTTATGCCGGTTGTCAAAATG
                                       gtttaat  putative branch site (score: 4)
                                             tcttcttc  CT-rich tract
                                atcatatgtttaat  TA-rich tract