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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtcctataattttgtttcaagcttttctaatgtcttgcctgcatgtttgtagctttttcttgataatcacttaaggataaaactacttctttatgaactttactatgtgtgtaccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG

Basic information

species Vitis vinifera
transcript Vv11s0052g01710.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os07g47290.3 (Oryza sativa), 3'ss of exon 14
gtttgtcctataattttgtttcaagcttttctaatgtcttgcctgcatgtttgtagctt-tttcttgataatcacttaaggataaaactacttctttatgaactttactatgtgtgtaccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG
                                                ||| ||  |||  |||   |   ||| | ||||   |   |||      |    | | |||   ||   |   |||||||| || ||||||||||||||||||||| | |||||| | || || ||||||||||| |||||||| || || || || |
------------------------------------------------gttagtttcttgcttccctaacgtcattcaaggt--agcttacagtggcagtgtcataactccatggaaaatttgcagCTGCCACCATGAGCTTGAGACTGCAAGAATTAATGGTCTGCTTGGGAATATTGATGCCAACACTGGTGATCCCCAGATCG

upper sequence: Vv11s0052g01710.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA17G07380.1 (Glycine max), 3'ss of exon 14
-------gtttgtcctataattttgtttca--agct-tttctaatgtcttgcctgcatgtttgtagctttttcttgataatcacttaaggataaaactacttctttatgaactttactatgtgtgtaccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG
       | |  |  |||| | |  || ||   ||| |   | || | |  | |  |  ||||    | ||  |  || || ||| ||  |    ||   |||||| |       | |     ||||||  | || |||||||||||||| || ||||||||  ||||||| || ||||| ||||||||||| |||||||| || |||||| |||
gtgaatcgatcattgtatattgtgtttacatgggctgtccttgatctttcccttttaaatttga---tattcataaatcataactgaa--actggacacgttctttgtacttacaatttctgttgtacctggtagTTGTCATCATGAGCTCGAAACTGCAAGGATCAATGGATTGCTGGGTAATATTGATGCAAACACTGGTGATCCTCAAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031975|gb|FQ460232.1|FQ460232
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|351032492|gb|FQ458857.1|FQ458857
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|349809734|gb|FQ398359.1|FQ398359
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCGTCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|349811710|gb|FQ409707.1|FQ409707
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCGTCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|349812955|gb|FQ411195.1|FQ411195
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|351032512|gb|FQ458877.1|FQ458877
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|352786892|gb|FQ481267.1|FQ481267
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|349820047|gb|FQ404769.1|FQ404769
EST:     GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: GAATTTAAGCTCAACATTGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
EST: gi|29784962|gb|CB341547.2|CB341547
EST:     TGAATGCAACCATGCAACCCTATCTGGTCACAG                         CTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT
genomic: TGAATGCAACCATGCAACCCTATCTGGTCACAGgtttgtccta ... taccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacttaaggataaaactacttctttatgaactttactatgtgtgtaccatgcagCTGTCATCATGAGCTTGAGACTGCAAGACTCAATGGTTTACTGGGAAATATTGATGCTAACACTGGCGACCCTCAAATTG
          ataaaacta  TA-rich tract