Sequence
atgc intronic sequence ATGC exonic sequencegtaatctacatgaataatcgcattagaaatttagcattcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G318635_T01 (Zea mays), 3'ss of exon 15
gtaatctacatgaataatcgcattagaaatttagcattcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
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gtaatcttt-tcatttctaaaagaaatagctgaataagaaattcttagagaattcatg-gacatcaacctttattttg---cctacttgcagCATGTTGCATGCTCATCAGCTGATGGCCGCACCCTGCTGGAGTCATCCAAGACTTTCCTGGATAAAGGGAAACTTGAGGATGCTGTTAGCTACGGCACAA
upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA06G30000.1 (Glycine max), 3'ss of exon 13
--gtaatctaca--tgaataatcgcattagaaatttagcattcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
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gtgaaatatataacttgacttttatgctggaaatttg---tactatttttctcaagcccaaatgactaaattac--aatttcaattattttcacagCATGTAGCTTGTTCATCTGCTGATGGCCGCACACTTTTGGAATCATCTAAGACTTCCTTGGATAAAGGTAAATTGGAGGATGCTGTCAACTATGGCACAA
upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G24430.1 (Glycine max), 3'ss of exon 12
gtaatctacatgaataatcgcattagaaatttagcatt----caattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
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gtaaaatacataataacttgactcttatgccggaaattaatactatttttctcaagccctaatgactaaattac--aatttcaatgattttcacagCATGTAGCTTGTTCATCTGCTGATGGCCGCACACTTTTGGAATCATCTAAGACTTCCTTGGATAAAGGTAAATTGGAGGATGCTGTCAACTATGGCACAA
upper sequence: Vv11s0037g00840.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT4G28080.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaatctacatgaataatcgcattagaa-atttagcattcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
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gtaccatgcat-aacgatcttactgtaataatcagctataatgaaacagtgatttgtttcagt-tacttaagaacactgc-tcttgtgtgcagCACGTAGCATGTTCATCCGCAGATGGGCGCACTTTGTTGGAATCATCCAAAACCTCCTTAGATAAAGGCAAACTGGAGGATGCTGTCAATTATGGCACCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
ctttaac putative branch site (score: 3)
tcttgcct putative PPT
tatctttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatctacatgaataatcgcattagaaatttagcattcaattttcattaggctcttaaggtatctttaacagagttgaatcttgcctacagCATGTTGCATGTTCATCTGCGGATGGTCGTACACTGTTGGAATCATCGAAGACTTCTTTGGATAAAGGGAAATTGGAAGATGCTGTTAACTATGGCACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT